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[175790_at] murine modifier 2 protein like

Description g3702833 /REP_DB=GenBank Identifier /GB=AF056580.1 /PROTEIN_GB=AAC78602.1 /CHR=X /FEA=Mapped Transcript /DEF=heterochromatin protein 1 homolog
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 71      6grp_total > 09      4grp_total > 13      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 349.9
(0.9)
P 		146.1
(-3)
P 		317
(0.2)
P 		463.6
(3)
P 		318
B 518.3
(3)
P 		334.9
(-2)
P 		299.4
(-3)
P 		482.7
(2)
P 		219
C 301.2
(-2.8)
P 		439.5
(0.7)
P 		295.1
(-3)
P 		526.8
(3)
P 		232
avr 389.8
(-0.2) 		306.8
(-2.9) 		303.8
(-3) 		491
(3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 286.2
(-0.8)
P 		323.2
(0.3)
P 		208.2
(-3)
P 		391.5
(2.2)
P 		418.5
(3)
P 		247.1
(-1.9)
P 		210
B 430.5
(2.5)
P 		284.8
(-1.3)
P 		222.6
(-3)
P 		448.1
(3)
P 		263.4
(-1.9)
P 		266.1
(-1.8)
P 		226
C 375.8
(3)
P 		312.4
(0.6)
P 		361.2
(2.4)
P 		219.6
(-3)
P 		266.7
(-1.2)
P 		262.6
(-1.3)
P 		156
avr 364.2
(3) 		306.8
(-0.3) 		264
(-2.7) 		353.1
(2.4) 		316.2
(0.3) 		258.6
(-3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 127.4
(3)
P 		31.7
(-3)
P 		82.9
(0.2)
P 		67.9
(-0.7)
P 		96
B 165.3
(3)
P 		82.7
(-2.2)
P 		69.4
(-3)
P 		102.9
(-0.9)
P 		96
C 99.7
(-1.3)
P 		126.4
(3)
P 		102.9
(-0.7)
P 		88.8
(-3)
P 		38
avr 130.8
(3) 		80.3
(-3) 		85.1
(-2.4) 		86.5
(-2.3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 52.8
(-2.5)
P 		114.9
(2.2)
P 		45.4
(-3)
P 		99.3
(1)
P 		126.3
(3)
P 		60.2
(-1.9)
P 		81
B 149.8
(3)
P 		94.8
(-0.4)
P 		54
(-3)
P 		118.7
(1.1)
P 		107
(0.3)
P 		99.2
(-0.2)
P 		96
C 139.3
(3)
P 		95.3
(0.2)
P 		91.9
(0)
P 		44.2
(-3)
P 		86.3
(-0.3)
P 		87.9
(-0.2)
P 		95
avr 114
(3) 		101.7
(1.5) 		63.8
(-3) 		87.4
(-0.2) 		106.5
(2.1) 		82.4
(-0.8) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20004
Sequence Type Exemplar sequence
Representative Public ID 3702833 NCBI
Target Description g3702833 /REP_DB=GenBank Identifier /GB=AF056580.1 /PROTEIN_GB=AAC78602.1 /CHR=X /FEA=Mapped Transcript /DEF=heterochromatin protein 1 homolog
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077798 NCBI Caenorhabditis elegans HP1 Like (heterochromatin protein) family member (hpl-1) (hpl-1) mRNA, complete cds. 11/11 A 
K08H2.6 ENSEMBL cdna:known chromosome:CEL140:X:13245326:13246966:1 gene:K08H2.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13245325-13246966(+) 97.08 100.0
Public Domain and Genome References
Gene Title murine modifier 2 protein like
Gene Symbol hpl-1
Ensembl K08H2.6
Entrez Gene 181450 Entrez gene
SwissProt Q21370 EMBL-EBI
WormBase CE06164 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94152 Hypothetical protein K08H2.6 [Caenorhabditis elegans] ref|NP_510199.1| HP1 Like (heterochromatin protein) family member (hpl-1) [Caenorhabditis elegans] gb|AAC78602.1| heterochromatin protein 1 homolog [Caenorhabditis elegans] 7.0E-94
blast CAB07241 Hypothetical protein K01G5.2a [Caenorhabditis elegans] ref|NP_001022652.1| HP1 Like (heterochromatin protein) family member (hpl-2) [Caenorhabditis elegans] gb|AAD21197.1| chromo-domain protein [Caenorhabditis elegans] 1.0E-31
blast CAB54267 Hypothetical protein K01G5.2c [Caenorhabditis elegans] ref|NP_001022654.1| HP1 Like (heterochromatin protein) family member (hpl-2) [Caenorhabditis elegans] 3.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR008251 EMBL-EBI Chromo shadow 3.2E-35
Pfam IPR000953 EMBL-EBI Chromo 3.9E-19
Sequence
Target Sequence 
>C. ELEGANS:175790_AT
ggaggaatgagctaatttaatttcaaaaattatatcgcaccctctccccttcccataatt
tgattgttctctcagtacgtttcgtgaattttctcgctgagatttcgttgatgaaggact
tactctttgttcgcttcccatttttcttaacaaatttttgaactttttatattaaatttt
ttcacatcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGAATGAGCTAATTTAATTTCA 492 513 575 Antisense
TTCAAAAATTATATCGCACCCTCTC 611 685 596 Antisense
CTCCCCTTCCCATAATTTGATTGTT 536 233 618 Antisense
TTTGATTGTTCTCTCAGTACGTTTC 72 667 633 Antisense
TTGTTCTCTCAGTACGTTTCGTGAA 685 705 638 Antisense
CTCTCAGTACGTTTCGTGAATTTTC 324 231 643 Antisense
GTGAATTTTCTCGCTGAGATTTCGT 123 481 658 Antisense
TTCTCGCTGAGATTTCGTTGATGAA 191 693 665 Antisense
GATGAAGGACTTACTCTTTGTTCGC 70 413 684 Antisense
GAAGGACTTACTCTTTGTTCGCTTC 47 335 687 Antisense
TTATATTAAATTTTTTCACATCATT 433 679 741 Antisense
Sequence Source GenBank