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[175789_s_at]

Description g3882434 /REP_DB=GenBank Identifier /GB=AF031519.1 /PROTEIN_GB=AAC78763.1 /CHR=3 /FEA=Mapped Transcript /DEF=myotubularin homologous protein 1
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 47      6grp_total > 79      4grp_total > 06      6grp_highest_sub > Cu      6grp_cgc > 19      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4060
1 2 3 4 range
A 3961.4
(1.9)
P 		2084.2
(-3)
P 		3161.1
(-0.2)
P 		4370.7
(3)
P 		2287
B 4187.6
(-0.4)
P 		2709.9
(-3)
P 		2892.2
(-2.7)
P 		6144
(3)
P 		3434
C 3345
(-1.3)
P 		2695
(-3)
P 		3183.8
(-1.7)
P 		4989.8
(3)
P 		2295
avr 3831.3
(-0) 		2496.4
(-3) 		3079
(-1.7) 		5168.2
(3) 		2672

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3064
1 2 3 4 5 6 range
A 3532.9
(-0.1)
P 		3273.5
(-0.9)
P 		2625.4
(-3)
P 		2784.1
(-2.5)
P 		4111
(1.8)
P 		4489.1
(3)
P 		1864
B 3478.9
(0)
P 		4060.7
(1.2)
P 		1930.9
(-3)
P 		3182.7
(-0.5)
P 		3279.8
(-0.4)
P 		4995.3
(3)
P 		3064
C 3513.4
(0.8)
P 		3792
(1.9)
P 		2929.6
(-1.4)
P 		2516.7
(-3)
P 		3375.3
(0.3)
P 		4071.7
(3)
P 		1555
avr 3508.4
(0) 		3708.7
(0.6) 		2495.3
(-3) 		2827.8
(-2) 		3588.7
(0.2) 		4518.7
(3) 		2023
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 990
1 2 3 4 range
A 1442.4
(3)
P 		452.4
(-3)
P 		826.4
(-0.7)
P 		639.8
(-1.9)
P 		990
B 1335.4
(3)
P 		669.3
(-3)
P 		670.2
(-3)
P 		1309.3
(2.8)
P 		666
C 1107.3
(3)
P 		774.8
(-3)
P 		1109.6
(3)
P 		841.4
(-1.8)
P 		335
avr 1295
(3) 		632.2
(-3) 		868.7
(-0.9) 		930.2
(-0.3) 		663

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1394
1 2 3 4 5 6 range
A 651.3
(-2.3)
P 		1164.2
(2.3)
P 		571.8
(-3)
P 		706.1
(-1.8)
P 		1240.5
(3)
P 		1092.9
(1.7)
P 		669
B 1210.5
(0.2)
P 		1351.6
(0.8)
P 		468.9
(-3)
P 		843
(-1.4)
P 		1332.5
(0.7)
P 		1862.7
(3)
P 		1394
C 1302.3
(2.6)
P 		1157.1
(1.6)
P 		745.6
(-1.3)
P 		506.1
(-3)
P 		1092.2
(1.1)
P 		1363
(3)
P 		857
avr 1054.7
(0.3) 		1224.3
(1.5) 		595.4
(-3) 		685.1
(-2.4) 		1221.7
(1.5) 		1439.5
(3) 		844
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175789_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19816
Sequence Type Exemplar sequence
Representative Public ID 3882434 NCBI
Target Description g3882434 /REP_DB=GenBank Identifier /GB=AF031519.1 /PROTEIN_GB=AAC78763.1 /CHR=3 /FEA=Mapped Transcript /DEF=myotubularin homologous protein 1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065365(11), NM_001027623(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065365 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-3) (mtm-3) mRNA, complete cds. 11/11 A 
NM_001027623 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-3) (mtm-3) mRNA, complete cds. 11/11 None
T24A11.1b ENSEMBL cdna:known chromosome:CEL140:III:3789962:3800412:-1 gene:T24A11.1 11/11 A 
T24A11.1a ENSEMBL cdna:known chromosome:CEL140:III:3789962:3800443:-1 gene:T24A11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3789961-3800386(-) 99.03 100.0
Public Domain and Genome References
Ensembl T24A11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61017 Hypothetical protein T24A11.1b [Caenorhabditis elegans] ref|NP_497766.2| MTM (myotubularin) family member (mtm-3) [Caenorhabditis elegans] 0.0
blast AAC78763 myotubularin homologous protein 1 [Caenorhabditis elegans] 0.0
blast CAA88884 Hypothetical protein T24A11.1a [Caenorhabditis elegans] ref|NP_001022794.1| MTM (myotubularin) family member (mtm-3) [Caenorhabditis elegans] sp|Q22712|YW91_CAEEL Hypothetical protein T24A11.1 in chromosome III 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010569 EMBL-EBI Myotubularin-related 1.2E-64
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 1.8E-25
Pfam IPR010569 EMBL-EBI Myotubularin-related 1.2E-64
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 1.8E-25
Sequence
Target Sequence 
>C. ELEGANS:175789_S_AT
gatactgtacatttgtttcgagttctatatgtttcgtaaaacattttggacgtcgtgtcg
tttcattctttaccggtcacttccgagttttttgaagaatccttctctattgtctatatt
tgtattcgaaaacattttgtactcaaactgtgatttctccaagagcccacaccaccacaa
gccgttttttgtgttaacccaactgtacataattgtacaaaactgaaaaatggtgtgaaa
cgcctctctcttgaattcatttttccacctcccaatcctccccgaatactgccgttttcc
ctctgtctaactggctcattatcatttcttctcgccctttctcaattataactatcacat
tttcttctttgtatttatttttgtatcatcattgctcactaactgtagacccttttcatt
ttgtgctaactgattagattgtgcctaccacatttcagaatttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTGTACATTTGTTTCGAGTTC 634 423 3430 Antisense
GTTTCGAGTTCTATATGTTTCGTAA 148 451 3444 Antisense
TTTGGACGTCGTGTCGTTTCATTCT 494 663 3474 Antisense
GTTTTTTGAAGAATCCTTCTCTATT 237 449 3516 Antisense
CTCGCCCTTTCTCAATTATAACTAT 501 233 3760 Antisense
AACTATCACATTTTCTTCTTTGTAT 45 141 3779 Antisense
ATTTTTGTATCATCATTGCTCACTA 616 15 3806 Antisense
TGCTCACTAACTGTAGACCCTTTTC 112 557 3822 Antisense
GACCCTTTTCATTTTGTGCTAACTG 525 381 3837 Antisense
AACTGATTAGATTGTGCCTACCACA 397 143 3857 Antisense
GTGCCTACCACATTTCAGAATTTTA 531 477 3870 Antisense
Sequence Source GenBank