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[175787_s_at]

Description g6478469 /REP_DB=GenBank Identifier /GB=AF179359.1 /PROTEIN_GB=AAF13869.1 /CHR=2 /FEA=Mapped Transcript /DEF=cyclin-dependent kinase inhibitor
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 89      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 92      6grp_total > 89      4grp_total > 23      6grp_highest_sub > Cu      6grp_cgc > 79      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 260.5
(3)
P 		142
(-3)
P 		190.5
(-0.5)
P 		198
(-0.2)
P 		119
B 280.1
(1.3)
P 		213.7
(-1.8)
P 		187.4
(-3)
P 		316.2
(3)
P 		129
C 314.6
(3)
P 		259.3
(-0.3)
P 		214.6
(-3)
P 		251.1
(-0.8)
P 		100
avr 285.1
(3) 		205
(-2.5) 		197.5
(-3) 		255.1
(0.9) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 254.2
(-1.5)
P 		283.1
(-1)
P 		182
(-3)
P 		223.3
(-2.2)
P 		474
(2.9)
P 		480.4
(3)
P 		298
B 303.6
(-2.1)
P 		318.3
(-1.8)
P 		272.3
(-2.8)
P 		260.8
(-3)
P 		448.4
(1)
P 		544.1
(3)
P 		283
C 361.2
(-0.6)
P 		258.8
(-2.9)
P 		256.5
(-3)
P 		258.2
(-3)
P 		402
(0.3)
P 		518.5
(3)
P 		262
avr 306.3
(-1.5) 		286.7
(-1.9) 		236.9
(-3) 		247.4
(-2.8) 		441.5
(1.4) 		514.3
(3) 		277
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 94.9
(3)
P 		30.8
(-2.8)
P 		49.8
(-1.1)
P 		29
(-3)
P 		66
B 89.3
(3)
P 		52.8
(-1.8)
P 		43.4
(-3)
P 		67.4
(0.1)
P 		46
C 104.1
(3)
P 		74.5
(0.1)
P 		74.8
(0.2)
P 		42.3
(-3)
P 		62
avr 96.1
(3) 		52.7
(-2.2) 		56
(-1.8) 		46.2
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 46.9
(-2.6)
P 		100.7
(0.5)
P 		39.6
(-3)
P 		56.6
(-2)
P 		143
(3)
P 		117
(1.5)
P 		103
B 105.6
(-1.3)
P 		106
(-1.3)
P 		66.1
(-3)
P 		69.1
(-2.9)
P 		182.2
(2.1)
P 		202.9
(3)
P 		137
C 133.9
(1)
P 		79
(-1.7)
P 		65.3
(-2.3)
P 		51.9
(-3)
P 		130.1
(0.9)
P 		173.6
(3)
P 		122
avr 95.5
(-0.9) 		95.2
(-0.9) 		57
(-3) 		59.2
(-2.9) 		151.8
(2.3) 		164.5
(3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175787_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19732
Sequence Type Exemplar sequence
Representative Public ID 6478469 NCBI
Target Description g6478469 /REP_DB=GenBank Identifier /GB=AF179359.1 /PROTEIN_GB=AAF13869.1 /CHR=2 /FEA=Mapped Transcript /DEF=cyclin-dependent kinase inhibitor
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027138(11), AF179359(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027138 NCBI Caenorhabditis elegans CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-2) (cki-2) mRNA, complete cds. 11/11 None
AF179359 NCBI Caenorhabditis elegans cyclin-dependent kinase inhibitor (cki-2) mRNA, complete cds. 11/11 None
T05A6.2b ENSEMBL cdna:known chromosome:CEL140:II:7816614:7820108:1 gene:T05A6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174261 2 1 NM_001027138 175787_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7816608-7819853(+) 99.49 99.49
Public Domain and Genome References
Ensembl T05A6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45597 Hypothetical protein T05A6.2b [Caenorhabditis elegans] ref|NP_001022309.1| CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-2) [Caenorhabditis elegans] gb|AAF13869.1| cyclin-dependent kinase inhibitor [Caenorhabditis elegans] 1.0E-128
blast CAA90670 Hypothetical protein T05A6.2a [Caenorhabditis elegans] ref|NP_495642.3| CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-2) [Caenorhabditis elegans] 1.0E-126
blast CAE67451 Hypothetical protein CBG12949 [Caenorhabditis briggsae] emb|CAE67449.1| Hypothetical protein CBG12945 [Caenorhabditis briggsae] 2.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR003175 EMBL-EBI Cyclin-dependent kinase inhibitor 5.1E-15
Sequence
Target Sequence 
>C. ELEGANS:175787_S_AT
gccggggacttttgaatttgagaagctcgtcattcaattgctagtcatcatgctcttcaa
cttcttgagtctgccaattcatcttctacagtaccacacaatcaatctcaatcagctgtt
cgtcataattgcattcaaagtggaactttcaccgtctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGGGGACTTTTGAATTTGAGAAG 65 283 796 Antisense
GACTTTTGAATTTGAGAAGCTCGTC 700 371 802 Antisense
GAGAAGCTCGTCATTCAATTGCTAG 105 393 815 Antisense
CAATTGCTAGTCATCATGCTCTTCA 437 179 830 Antisense
ATTCATCTTCTACAGTACCACACAA 538 11 872 Antisense
GTACCACACAATCAATCTCAATCAG 22 459 886 Antisense
CACACAATCAATCTCAATCAGCTGT 178 195 890 Antisense
AATCAGCTGTTCGTCATAATTGCAT 236 171 905 Antisense
AGCTGTTCGTCATAATTGCATTCAA 402 81 909 Antisense
GTTCGTCATAATTGCATTCAAAGTG 320 443 913 Antisense
CAAAGTGGAACTTTCACCGTCTACT 46 193 931 Antisense
Sequence Source GenBank