[Home] | [Total List]

[175786_at]

Description g6478467 /REP_DB=GenBank Identifier /GB=AF179358.1 /PROTEIN_GB=AAF13868.1 /CHR=2 /FEA=Mapped Transcript /DEF=cyclin-dependent kinase inhibitor
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 14      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_highest_nonorm > 20      6grp_total > 04      4grp_total > 36      6grp_highest_sub > De      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 1275.4
(-0.5)
P 		1421.2
(3)
P 		1181.1
(-2.7)
P 		1170.4
(-3)
P 		251
B 1267.8
(1.6)
P 		1319.8
(3)
P 		1093.1
(-3)
P 		1192.9
(-0.4)
P 		227
C 1198.8
(-1.8)
P 		1178.1
(-2.3)
P 		1149.8
(-3)
P 		1398.1
(3)
P 		248
avr 1247.3
(0.9) 		1306.4
(3) 		1141.3
(-3) 		1253.8
(1.1) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 833
1 2 3 4 5 6 range
A 1440.2
(3)
P 		1051.1
(-0.3)
P 		1009.4
(-0.7)
P 		912.3
(-1.5)
P 		1137.4
(0.4)
P 		740.9
(-3)
P 		699
B 1574.1
(3)
P 		1477.3
(2.1)
P 		907.1
(-3)
P 		1144.3
(-0.9)
P 		989.8
(-2.3)
P 		914.4
(-2.9)
P 		667
C 1049.7
(-0.6)
P 		1432.7
(3)
P 		892.5
(-2.1)
P 		1005.7
(-1)
P 		1006.4
(-1)
P 		792
(-3)
P 		641
avr 1354.7
(3) 		1320.4
(2.6) 		936.3
(-1.7) 		1020.8
(-0.7) 		1044.5
(-0.5) 		815.8
(-3) 		539
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 464.4
(3)
P 		308.5
(-0.2)
P 		308.8
(-0.2)
P 		171.3
(-3)
P 		293
B 404.3
(3)
P 		326
(-0.1)
P 		253.3
(-3)
P 		254.2
(-3)
P 		151
C 396.8
(2.9)
P 		338.7
(0.7)
P 		400.7
(3)
P 		235.7
(-3)
P 		165
avr 421.8
(3) 		324.4
(0.1) 		320.9
(-0) 		220.4
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 265.5
(-0.4)
P 		373.8
(3)
P 		219.8
(-1.8)
P 		231.4
(-1.4)
P 		343.2
(2.1)
P 		180.4
(-3)
P 		193
B 547.7
(3)
P 		491.7
(2)
P 		220.3
(-3)
P 		303.1
(-1.5)
P 		402.2
(0.3)
P 		341
(-0.8)
P 		327
C 389.1
(1.8)
P 		437.2
(3)
P 		227.2
(-2.4)
P 		202.3
(-3)
P 		325.6
(0.1)
P 		265.1
(-1.4)
P 		235
avr 400.8
(2.1) 		434.2
(3) 		222.4
(-3) 		245.6
(-2.3) 		357
(0.8) 		262.2
(-1.9) 		212
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175786_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19730
Sequence Type Exemplar sequence
Representative Public ID 6478467 NCBI
Target Description g6478467 /REP_DB=GenBank Identifier /GB=AF179358.1 /PROTEIN_GB=AAF13868.1 /CHR=2 /FEA=Mapped Transcript /DEF=cyclin-dependent kinase inhibitor
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063240 NCBI Caenorhabditis elegans CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-1) (cki-1) mRNA, complete cds. 11/11 A 
T05A6.1.2 ENSEMBL cdna:known chromosome:CEL140:II:7811160:7811975:1 gene:T05A6.1 10/11 None
T05A6.1.1 ENSEMBL cdna:known chromosome:CEL140:II:7811162:7812022:1 gene:T05A6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7811156-7812020(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cki-1
Ensembl T05A6.1
Entrez Gene 174260 Entrez gene
SwissProt Q22197 EMBL-EBI
WormBase CE03628 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7050 cell cycle arrest inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4861 cyclin-dependent protein kinase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90667 Hypothetical protein T05A6.1 [Caenorhabditis elegans] ref|NP_495641.1| CKI family (Cyclin-dependent Kinase Inhibitor) family member (cki-1) [Caenorhabditis elegans] gb|AAF13868.1| cyclin-dependent kinase inhibitor [Caenorhabditis elegans] sp|Q22197|CKI1_CAEEL Cyclin-dependent kinase inhibitor 1.0E-78
blast CAE67452 Hypothetical protein CBG12951 [Caenorhabditis briggsae] 3.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003175 EMBL-EBI Cyclin-dependent kinase inhibitor 3.6E-16
Sequence
Target Sequence 
>C. ELEGANS:175786_AT
tgctctccatactagaggtttcattttgacttttttttgcccaattccacgggttgaatc
taatcatttgattatctcctcgacagtttctgagtctctcttaattgttcaactagtcat
gtttccacaaatgttttattgtttgttccaaaagccctgtgatccatgtttaggaactct
gtaactcttttttcccattgccatttgttttaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTCCATACTAGAGGTTTCATT 263 581 574 Antisense
TTTTGCCCAATTCCACGGGTTGAAT 78 675 608 Antisense
TCCACGGGTTGAATCTAATCATTTG 670 587 619 Antisense
ATCATTTGATTATCTCCTCGACAGT 639 29 636 Antisense
TCCTCGACAGTTTCTGAGTCTCTCT 446 593 650 Antisense
GAGTCTCTCTTAATTGTTCAACTAG 591 399 665 Antisense
GTTCAACTAGTCATGTTTCCACAAA 574 443 680 Antisense
TATTGTTTGTTCCAAAAGCCCTGTG 152 659 710 Antisense
AAAGCCCTGTGATCCATGTTTAGGA 84 125 724 Antisense
ATGTTTAGGAACTCTGTAACTCTTT 672 45 739 Antisense
TTCCCATTGCCATTTGTTTTAAACA 2 699 765 Antisense
Sequence Source GenBank