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[175784_at]

Description g451885 /REP_DB=GenBank Identifier /GB=L26290.1 /PROTEIN_GB=AAA27981.1 /CHR=X /FEA=Mapped Transcript /DEF=clathrin-associated protein homologue
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 21      6grp_total > 14      4grp_total > 51      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 999
1 2 3 4 range
A 1335.5
(-0.1)
P 		1720
(3)
P 		1541.5
(1.6)
P 		964
(-3)
P 		756
B 1219.4
(0.1)
P 		1538.1
(3)
P 		1421.7
(1.9)
P 		878.5
(-3)
P 		660
C 1220.1
(0.1)
P 		1686.7
(3)
P 		1415
(1.3)
P 		721.3
(-3)
P 		965
avr 1258.3
(0.1) 		1648.3
(3) 		1459.4
(1.6) 		854.6
(-3) 		794

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1033
1 2 3 4 5 6 range
A 1028.5
(-0.9)
P 		1358.1
(3)
P 		1250.9
(1.7)
P 		1040
(-0.8)
P 		1040
(-0.8)
P 		853.4
(-3)
P 		505
B 1833
(3)
P 		1428.3
(0.4)
P 		940.4
(-2.6)
P 		1330.1
(-0.2)
P 		951.3
(-2.6)
P 		882.6
(-3)
P 		950
C 1596.3
(3)
P 		1485.4
(2.2)
P 		1240.8
(0.3)
P 		1023.1
(-1.3)
P 		800.2
(-3)
P 		854.5
(-2.6)
P 		796
avr 1485.9
(3) 		1423.9
(2.4) 		1144
(-0.3) 		1131.1
(-0.4) 		930.5
(-2.4) 		863.5
(-3) 		622
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 486.3
(3)
P 		373.4
(1)
P 		403
(1.6)
P 		141.1
(-3)
P 		345
B 388.9
(3)
P 		379.9
(2.7)
P 		329.4
(1.2)
P 		187.2
(-3)
P 		202
C 403.9
(1.6)
P 		484.9
(2.9)
P 		493.2
(3)
P 		121.6
(-3)
P 		372
avr 426.4
(3) 		412.7
(2.7) 		408.5
(2.6) 		150
(-3) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 189.6
(-3)
P 		483
(3)
P 		272.4
(-1.3)
P 		263.8
(-1.5)
P 		313.8
(-0.5)
P 		207.8
(-2.6)
P 		293
B 637.8
(3)
P 		475.4
(0.6)
P 		228.4
(-3)
P 		352.3
(-1.2)
P 		386.5
(-0.7)
P 		329.1
(-1.5)
P 		409
C 591.7
(3)
P 		453.2
(0.8)
P 		315.8
(-1.3)
P 		205.8
(-3)
P 		258.9
(-2.2)
P 		286.1
(-1.8)
P 		386
avr 473
(3) 		470.5
(2.9) 		272.2
(-3) 		274
(-2.9) 		319.7
(-1.6) 		274.3
(-2.9) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175784_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19963
Sequence Type Exemplar sequence
Representative Public ID 451885 NCBI
Target Description g451885 /REP_DB=GenBank Identifier /GB=L26290.1 /PROTEIN_GB=AAA27981.1 /CHR=X /FEA=Mapped Transcript /DEF=clathrin-associated protein homologue
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029694(11), NM_171670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029694 NCBI Caenorhabditis elegans DumPY : shorter than wild-type family member (dpy-23) (dpy-23) mRNA, complete cds. 11/11 None
NM_171670 NCBI Caenorhabditis elegans DumPY : shorter than wild-type family member (dpy-23) (dpy-23) mRNA, complete cds. 11/11 A 
R160.1b.1 ENSEMBL cdna:known chromosome:CEL140:X:4389337:4393768:1 gene:R160.1 11/11 None
R160.1b.2 ENSEMBL cdna:known chromosome:CEL140:X:4389338:4393768:1 gene:R160.1 11/11 None
R160.1a ENSEMBL cdna:known chromosome:CEL140:X:4389338:4393774:1 gene:R160.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4389336-4393775(+) 96.35 100.0
Public Domain and Genome References
Ensembl R160.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP13778 Dumpy : shorter than wild-type protein 23, isoform b [Caenorhabditis elegans] ref|NP_001024865.1| DumPY : shorter than wild-type family member (dpy-23) [Caenorhabditis elegans] 0.0
blast AAP13777 Dumpy : shorter than wild-type protein 23, isoform a [Caenorhabditis elegans] ref|NP_741770.1| DumPY : shorter than wild-type family member (dpy-23) [Caenorhabditis elegans] sp|P35603|AP50_CAEEL Clathrin coat assembly protein AP50 (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) (Dumpy protein 23) 0.0
blast CAE68591 Hypothetical protein CBG14461 [Caenorhabditis briggsae] 0.0
blast AAA27981 clathrin-associated protein homologue 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 1.0E-126
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175784_AT
cccagccgtcaagcttgaacatttgctcattctcggttccaagtgttaaatattatttat
ttgcttcatacaatttttaattttttgtaatatttttgtattattttccaaatttcataa
tgtagagtcatcgcagcattacagtactgtaagagttgttttcaatttataagaactatt
agatctttagacgtctcgataagcattttcgcatgcttataattccatgcattttccgtg
ccaaaattcaaaaacccccgccccaccccgttccatctttatttattgtcagtgtaaaat
ttcaaaatttctggaatctttttccatcataaaattcacttcaaaacgtcttctgaaccc
cgttggagcaataacatttttaaaatatttttttcatttaccttttcttcataattcatc
ataatttattgtaacggcttaatttgatatattgttctttctacattccattttttgtct
ctctctcaaaaattttcaaatttctattgttcatttctcatttctaggtccgcaattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAGCCGTCAAGCTTGAACATTTG 218 257 1385 Antisense
GAACATTTGCTCATTCTCGGTTCCA 188 351 1401 Antisense
GCTCATTCTCGGTTCCAAGTGTTAA 139 301 1409 Antisense
AGAGTCATCGCAGCATTACAGTACT 525 67 1508 Antisense
AGATCTTTAGACGTCTCGATAAGCA 89 65 1565 Antisense
TCAAAACGTCTTCTGAACCCCGTTG 223 627 1725 Antisense
GAACCCCGTTGGAGCAATAACATTT 302 345 1739 Antisense
TACCTTTTCTTCATAATTCATCATA 702 649 1783 Antisense
TATTGTTCTTTCTACATTCCATTTT 587 665 1834 Antisense
TTCTATTGTTCATTTCTCATTTCTA 441 691 1886 Antisense
TCTCATTTCTAGGTCCGCAATTCAA 389 613 1900 Antisense
Sequence Source GenBank