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[175782_s_at] C2H2-type zinc finger

Description g4323034 /REP_DB=GenBank Identifier /GB=AF097737.1 /PROTEIN_GB=AAD16170.1 /CHR=X /FEA=Mapped Transcript /DEF=hunchback-related protein
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 10      6grp_total > 36      4grp_total > 36      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 1271
(3)
P 		1246.1
(2.6)
P 		867.1
(-3)
P 		1092.6
(0.3)
P 		404
B 1217.5
(3)
P 		1184.1
(2.4)
P 		876.2
(-3)
P 		1219.5
(3)
P 		343
C 982
(-0.5)
P 		1053.2
(3)
P 		931.6
(-3)
P 		984
(-0.4)
P 		122
avr 1156.8
(2.9) 		1161.1
(3) 		891.6
(-3) 		1098.7
(1.6) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1815
1 2 3 4 5 6 range
A 2313.2
(3)
P 		1896.8
(1.4)
P 		748.3
(-2.9)
P 		737
(-3)
P 		734.9
(-3)
P 		1650.3
(0.5)
P 		1578
B 2026.5
(3)
P 		1911.3
(2.5)
P 		1080
(-0.7)
P 		924.4
(-1.3)
P 		498.1
(-3)
P 		1384.7
(0.5)
P 		1528
C 1608.5
(2.6)
P 		1677.4
(3)
P 		1444.3
(1.8)
P 		830.1
(-1.4)
P 		528
(-3)
P 		1093.2
(-0)
P 		1149
avr 1982.7
(3) 		1828.5
(2.3) 		1090.9
(-0.8) 		830.5
(-2) 		587
(-3) 		1376.1
(0.4) 		1396
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 462.8
(3)
P 		270.5
(-0.8)
P 		226.7
(-1.7)
P 		159.9
(-3)
P 		303
B 388.3
(3)
P 		292.4
(-0.1)
P 		203
(-3)
P 		259.9
(-1.2)
P 		185
C 325.1
(3)
P 		302.8
(2.2)
P 		324.7
(3)
P 		165.9
(-3)
P 		159
avr 392.1
(3) 		288.6
(-0.2) 		251.5
(-1.3) 		195.2
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 542
1 2 3 4 5 6 range
A 426.4
(0.1)
P 		674.6
(3)
P 		163
(-3)
P 		186.9
(-2.7)
P 		221.8
(-2.3)
P 		401.8
(-0.2)
P 		512
B 705.1
(3)
P 		636.2
(2.2)
P 		262.3
(-2.3)
P 		244.8
(-2.5)
P 		202.4
(-3)
P 		516.3
(0.7)
P 		503
C 596.2
(3)
P 		511.8
(1.8)
P 		367.6
(-0.2)
P 		166.9
(-3)
P 		170.9
(-2.9)
P 		366
(-0.2)
P 		429
avr 575.9
(2.5) 		607.5
(3) 		264.3
(-2) 		199.5
(-3) 		198.4
(-3) 		428
(0.4) 		409
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175782_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19973
Sequence Type Exemplar sequence
Representative Public ID 4323034 NCBI
Target Description g4323034 /REP_DB=GenBank Identifier /GB=AF097737.1 /PROTEIN_GB=AAD16170.1 /CHR=X /FEA=Mapped Transcript /DEF=hunchback-related protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076575 NCBI Caenorhabditis elegans HunchBack Like (fly gap gene related) family member (hbl-1) (hbl-1) mRNA, complete cds. 11/11 A 
F13D11.2 ENSEMBL cdna:known chromosome:CEL140:X:5822109:5827716:1 gene:F13D11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5822108-5827716(+) 100.0 100.0
Public Domain and Genome References
Gene Title C2H2-type zinc finger
Gene Symbol hbl-1
Ensembl F13D11.2
Entrez Gene 180848 Entrez gene
WormBase CE27956 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81701 Hunchback like (fly gap gene related) protein 1 [Caenorhabditis elegans] ref|NP_508976.1| HunchBack Like (fly gap gene related) family member (hbl-1) [Caenorhabditis elegans] gb|AAD16170.1| hunchback-related protein [Caenorhabditis elegans] sp|Q9XYD3|HBL1_CAEEL Hunchback-like protein 0.0
blast T16057 hypothetical protein F13D11.2 - Caenorhabditis elegans 0.0
blast CAE68806 Hypothetical protein CBG14758 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175782_S_AT
ctcccatgtcgtgatttctgatttcacattttccagactatctcgcactttcattctacc
tcaatacatcccagcttttttgccatacattctccgattcgaattcatgtgtgctcgttt
aactattattacctgtatccaccgattacttttttgtttattcgctcccttttttctatc
tcaggaatgatttatagttttcaatttgtcttctcacaactcatctaaactacttgtccg
ctaccttatgtacctcattgactcattttgccatcacccaatacaatttatacctcaata
ctgtctcttacctgtataatgccttctacctccaatttttaccatctattctagttaatt
accattttctacctcaacccattttctattatacaaccgttccacctcaaacttcagtgc
gttcttctgtcatcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCATGTCGTGATTTCTGATTTC 446 233 3966 Antisense
TTTCATTCTACCTCAATACATCCCA 608 671 4014 Antisense
ATCCCAGCTTTTTTGCCATACATTC 142 39 4033 Antisense
GCTCCCTTTTTTCTATCTCAGGAAT 420 297 4129 Antisense
TCATCTAAACTACTTGTCCGCTACC 418 617 4186 Antisense
GTACCTCATTGACTCATTTTGCCAT 66 459 4215 Antisense
TATACCTCAATACTGTCTCTTACCT 421 661 4254 Antisense
CTACCTCCAATTTTTACCATCTATT 583 223 4291 Antisense
CTACCTCAACCCATTTTCTATTATA 385 225 4334 Antisense
TATTATACAACCGTTCCACCTCAAA 605 661 4352 Antisense
TTCAGTGCGTTCTTCTGTCATCATG 221 687 4378 Antisense
Sequence Source GenBank