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[175778_s_at]

Description g3002896 /REP_DB=GenBank Identifier /GB=AF042388.1 /PROTEIN_GB=AAC08939.1 /CHR=X /FEA=Mapped Transcript /DEF=FMRFamide-like peptide 2b
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 86      6grp_total > 56      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4096
1 2 3 4 range
A 1031
(-2)
P 		661.6
(-2.6)
P 		406.7
(-3)
P 		4265
(3)
P 		3858
B 1219.7
(-1.9)
P 		671.9
(-2.7)
P 		490.2
(-3)
P 		4386.2
(3)
P 		3896
C 1279.3
(-1.9)
P 		689.1
(-2.8)
P 		525.7
(-3)
P 		4502.2
(3)
P 		3977
avr 1176.7
(-1.9) 		674.2
(-2.7) 		474.2
(-3) 		4384.5
(3) 		3910

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 918
(-1.7)
P 		1022.5
(0.2)
P 		975.6
(-0.7)
P 		849.5
(-3)
P 		899.9
(-2.1)
P 		1172.4
(3)
P 		323
B 986.1
(-0.7)
P 		1073.1
(1.7)
P 		1121
(3)
P 		904.5
(-3)
P 		917.1
(-2.7)
P 		1041.2
(0.8)
P 		217
C 919.1
(-1.4)
P 		1011.8
(-0.3)
P 		811.2
(-2.6)
P 		778.7
(-3)
P 		999.9
(-0.4)
P 		1291.6
(3)
P 		513
avr 941.1
(-1.2) 		1035.8
(0.5) 		969.3
(-0.7) 		844.2
(-3) 		939
(-1.2) 		1168.4
(3) 		324
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 828
1 2 3 4 range
A 375.4
(0.1)
P 		143.6
(-2.6)
P 		106.3
(-3)
P 		624.3
(3)
P 		518
B 389
(-1)
P 		165.9
(-2.6)
P 		113.6
(-3)
P 		934.7
(3)
P 		821
C 423.5
(-0.5)
P 		198.1
(-2.8)
P 		183.2
(-3)
P 		759.1
(3)
P 		576
avr 396
(-0.5) 		169.2
(-2.7) 		134.4
(-3) 		772.7
(3) 		638

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 169.2
(-3)
P 		363.7
(3)
P 		212.5
(-1.7)
P 		215.5
(-1.6)
P 		271.6
(0.2)
P 		285.4
(0.6)
P 		195
B 343.1
(1.2)
P 		357.2
(1.7)
P 		272.2
(-1.7)
P 		239.6
(-3)
P 		372.6
(2.4)
P 		388.3
(3)
P 		149
C 340.7
(1)
P 		308.7
(0.3)
P 		206.5
(-1.9)
P 		156.6
(-3)
P 		323.6
(0.6)
P 		432.4
(3)
P 		276
avr 284.3
(-0.1) 		343.2
(2.1) 		230.4
(-2) 		203.9
(-3) 		322.6
(1.3) 		368.7
(3) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175778_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19994
Sequence Type Exemplar sequence
Representative Public ID 3002896 NCBI
Target Description g3002896 /REP_DB=GenBank Identifier /GB=AF042388.1 /PROTEIN_GB=AAC08939.1 /CHR=X /FEA=Mapped Transcript /DEF=FMRFamide-like peptide 2b
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029775(11), NM_001029774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029775 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-2) (flp-2) mRNA, complete cds. 11/11 None
NM_001029774 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-2) (flp-2) mRNA, complete cds. 11/11 None
GENEFINDER00000023745 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10094558:10095153:-1 11/11 None
W07E11.3b ENSEMBL cdna:known chromosome:CEL140:X:10094361:10095155:-1 gene:W07E11.3 11/11 A 
W07E11.3a ENSEMBL cdna:known chromosome:CEL140:X:10094361:10095153:-1 gene:W07E11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10094360-10095153(-) 100.0 100.0
Public Domain and Genome References
Ensembl W07E11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90031 Hypothetical protein W07E11.3a [Caenorhabditis elegans] ref|NP_001024945.1| FMRF-Like Peptide family member (flp-2) [Caenorhabditis elegans] gb|AAC08938.1| FMRFamide-like peptide 2a [Caenorhabditis elegans] 6.0E-54
blast CAA90031 Hypothetical protein W07E11.3a [Caenorhabditis elegans] ref|NP_001024945.1| FMRF-Like Peptide family member (flp-2) [Caenorhabditis elegans] gb|AAC08938.1| FMRFamide-like peptide 2a [Caenorhabditis elegans] 7.0E-54
blast CAC42354 Hypothetical protein W07E11.3b [Caenorhabditis elegans] ref|NP_001024946.1| FMRF-Like Peptide family member (flp-2) [Caenorhabditis elegans] gb|AAC08939.1| FMRFamide-like peptide 2b [Caenorhabditis elegans] 1.0E-35
blast CAC42354 Hypothetical protein W07E11.3b [Caenorhabditis elegans] ref|NP_001024946.1| FMRF-Like Peptide family member (flp-2) [Caenorhabditis elegans] gb|AAC08939.1| FMRFamide-like peptide 2b [Caenorhabditis elegans] 7.0E-31
blast CAC42354 Hypothetical protein W07E11.3b [Caenorhabditis elegans] ref|NP_001024946.1| FMRF-Like Peptide family member (flp-2) [Caenorhabditis elegans] gb|AAC08939.1| FMRFamide-like peptide 2b [Caenorhabditis elegans] 8.0E-31
blast CAA90031 Hypothetical protein W07E11.3a [Caenorhabditis elegans] ref|NP_001024945.1| FMRF-Like Peptide family member (flp-2) [Caenorhabditis elegans] gb|AAC08938.1| FMRFamide-like peptide 2a [Caenorhabditis elegans] 9.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024946.1 1 5-27
NP_001024945.1 1 5-27
W07E11.3b 1 5-27
W07E11.3a 1 5-27
GENEFINDER00000023745 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:175778_S_AT
gcaagtttctggaatcctatctgctcttttcctcgtccttctcgccgtcattggtactac
tgtcgcccagccagctgtcaacgacaacactcttggaattttcgaagcttcagcaatggc
aaaacgtcttcgtggagaacccattcgttttggcaaacgctccccgcgcgagcccattcg
tttcggaaaacgattcaatccgctgccagattacgactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGTTTCTGGAATCCTATCTGCT 666 319 84 Antisense
TCTGGAATCCTATCTGCTCTTTTCC 706 607 91 Antisense
CCAGCCAGCTGTCAACGACAACACT 152 269 150 Antisense
GCTGTCAACGACAACACTCTTGGAA 620 295 157 Antisense
ACGACAACACTCTTGGAATTTTCGA 288 93 164 Antisense
GAAGCTTCAGCAATGGCAAAACGTC 677 341 187 Antisense
CAGCAATGGCAAAACGTCTTCGTGG 138 205 194 Antisense
ACGTCTTCGTGGAGAACCCATTCGT 307 77 207 Antisense
GAACCCATTCGTTTTGGCAAACGCT 295 347 220 Antisense
CGATTCAATCCGCTGCCAGATTACG 194 247 274 Antisense
TCAATCCGCTGCCAGATTACGACTT 481 633 278 Antisense
Sequence Source GenBank