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[175777_at]

Description g3002896 /REP_DB=GenBank Identifier /GB=AF042388.1 /PROTEIN_GB=AAC08939.1 /CHR=X /FEA=Mapped Transcript /DEF=FMRFamide-like peptide 2b
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 76      6grp_total > 47      4grp_total > 04      6grp_highest_sub > Cu      6grp_cgc > 27      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5245
1 2 3 4 range
A 1520
(-1.9)
P 		854.3
(-2.7)
P 		571.7
(-3)
P 		5817.1
(3)
P 		5245
B 1610.7
(-1.6)
P 		754.7
(-2.8)
P 		574.6
(-3)
P 		5023.4
(3)
P 		4449
C 1541.4
(-1.7)
P 		801.9
(-2.7)
P 		592
(-3)
P 		4918.4
(3)
P 		4326
avr 1557.4
(-1.7) 		803.6
(-2.7) 		579.4
(-3) 		5253
(3) 		4674

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 1357.4
(1.7)
P 		1291.8
(0.7)
P 		1060.7
(-2.7)
P 		1037.6
(-3)
P 		1102.3
(-2)
P 		1445.3
(3)
P 		408
B 1215.7
(0.1)
P 		1306.4
(1.6)
P 		1030.2
(-3)
P 		1124.7
(-1.4)
P 		1069.8
(-2.3)
P 		1390
(3)
P 		360
C 1302.9
(2.1)
P 		1199.6
(-0.3)
P 		1128.6
(-1.9)
P 		1081.8
(-3)
P 		1112.4
(-2.3)
P 		1340.7
(3)
P 		259
avr 1292
(1.1) 		1265.9
(0.6) 		1073.2
(-3) 		1081.4
(-2.8) 		1094.8
(-2.6) 		1392
(3) 		319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 937
1 2 3 4 range
A 553.4
(0.5)
P 		185.5
(-2.7)
P 		149.5
(-3)
P 		851.5
(3)
P 		702
B 513.7
(-0.6)
P 		186.4
(-2.7)
P 		133.1
(-3)
P 		1070.5
(3)
P 		937
C 510.3
(-0.1)
P 		230.5
(-2.8)
P 		206.3
(-3)
P 		829.3
(3)
P 		623
avr 525.8
(-0.1) 		200.8
(-2.7) 		163
(-3) 		917.1
(3) 		754

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 250.2
(-2.5)
P 		459.4
(3)
P 		231
(-3)
P 		263.2
(-2.2)
P 		332.6
(-0.3)
P 		351.9
(0.2)
P 		228
B 423
(0.9)
P 		434.9
(1.1)
P 		250.2
(-3)
P 		297.9
(-1.9)
P 		434.6
(1.1)
P 		518.3
(3)
P 		268
C 482.9
(3)
P 		366
(0.4)
P 		287.3
(-1.4)
P 		217.5
(-3)
P 		359.9
(0.2)
P 		448.8
(2.2)
P 		265
avr 385.4
(1.2) 		420.1
(2.4) 		256.2
(-3) 		259.5
(-2.9) 		375.7
(0.9) 		439.7
(3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175777_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19994
Sequence Type Exemplar sequence
Representative Public ID 3002896 NCBI
Target Description g3002896 /REP_DB=GenBank Identifier /GB=AF042388.1 /PROTEIN_GB=AAC08939.1 /CHR=X /FEA=Mapped Transcript /DEF=FMRFamide-like peptide 2b
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029775(11), NM_001029774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029775 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-2) (flp-2) mRNA, complete cds. 11/11 None
NM_001029774 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-2) (flp-2) mRNA, complete cds. 11/11 None
W07E11.3b ENSEMBL cdna:known chromosome:CEL140:X:10094361:10095155:-1 gene:W07E11.3 11/11 A 
W07E11.3a ENSEMBL cdna:known chromosome:CEL140:X:10094361:10095153:-1 gene:W07E11.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000023745 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10094360-10095153(-) 100.0 100.0
Public Domain and Genome References
Ensembl W07E11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90031 Hypothetical protein W07E11.3a [Caenorhabditis elegans] ref|NP_001024945.1| FMRF-Like Peptide family member (flp-2) [Caenorhabditis elegans] gb|AAC08938.1| FMRFamide-like peptide 2a [Caenorhabditis elegans] 7.0E-54
blast CAC42354 Hypothetical protein W07E11.3b [Caenorhabditis elegans] ref|NP_001024946.1| FMRF-Like Peptide family member (flp-2) [Caenorhabditis elegans] gb|AAC08939.1| FMRFamide-like peptide 2b [Caenorhabditis elegans] 1.0E-35
blast CAC42354 Hypothetical protein W07E11.3b [Caenorhabditis elegans] ref|NP_001024946.1| FMRF-Like Peptide family member (flp-2) [Caenorhabditis elegans] gb|AAC08939.1| FMRFamide-like peptide 2b [Caenorhabditis elegans] 8.0E-31
blast CAA90031 Hypothetical protein W07E11.3a [Caenorhabditis elegans] ref|NP_001024945.1| FMRF-Like Peptide family member (flp-2) [Caenorhabditis elegans] gb|AAC08938.1| FMRFamide-like peptide 2a [Caenorhabditis elegans] 9.0E-31
blast CAE58781 Hypothetical protein CBG01979 [Caenorhabditis briggsae] 1.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024946.1 1 5-27
NP_001024945.1 1 5-27
W07E11.3b 1 5-27
W07E11.3a 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:175777_AT
agagctttcgtctgactcattgtcagtcgttgccaaaccaattgtcgcaaaccatgcaag
tttctggaatcctatctgctcttttcctcgtccttctcgccgtcattggtactactgtcg
cccagccagctgtcaacgacaacactcttggaattttcgaagcttcagcaatggcaaaac
gtcttcgtggagaacccattcgttttggcaaacgctccccgcgcgagcccattcgtttcg
gaaaacgattcaatccgctgccagattacgacttccaataactccatcctatcaatgatt
caatgcacggtgaaccccactactcagccaacatcatattagatattccaacattttctt
cccattctcgtcctatattttgatccgtactttcaatgcaacaacattttttaaactatg
tttcctataacttcgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCTTTCGTCTGACTCATTGTCA 36 69 29 Antisense
ACTCATTGTCAGTCGTTGCCAAACC 239 97 43 Antisense
GTTGCCAAACCAATTGTCGCAAACC 51 441 57 Antisense
GTCGCAAACCATGCAAGTTTCTGGA 381 475 72 Antisense
CTTCCAATAACTCCATCCTATCAAT 355 219 300 Antisense
TGATTCAATGCACGGTGAACCCCAC 147 565 324 Antisense
CCACTACTCAGCCAACATCATATTA 571 273 345 Antisense
AGATATTCCAACATTTTCTTCCCAT 58 65 369 Antisense
TCCCATTCTCGTCCTATATTTTGAT 595 597 388 Antisense
GATCCGTACTTTCAATGCAACAACA 368 415 410 Antisense
AACTATGTTTCCTATAACTTCGAAT 508 137 442 Antisense
Sequence Source GenBank