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[175776_s_at] MIP transmembrane protein

Description g5579405 /REP_DB=GenBank Identifier /GB=AF164113.1 /PROTEIN_GB=AAD45535.1 /CHR=5 /FEA=Mapped Transcript /DEF=zinc finger protein STAT-B
Cluster 6grp_high1_10_10 > 56      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_total > 47      4grp_total > 23      6grp_cgc > 36      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 376.3
(3)
P 		155.2
(-2.8)
P 		149.3
(-3)
P 		347.2
(2.2)
P 		227
B 410
(3)
P 		155
(-2.3)
P 		118.6
(-3)
P 		337.9
(1.5)
P 		291
C 363.6
(3)
P 		165.8
(-3)
P 		186.4
(-2.4)
P 		340.8
(2.3)
P 		198
avr 383.3
(3) 		158.7
(-2.8) 		151.4
(-3) 		342
(1.9) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 248
(1.2)
P 		184.7
(-1.5)
P 		244.1
(1)
P 		203
(-0.7)
P 		148.8
(-3)
P 		290
(3)
P 		141
B 283.8
(3)
P 		210.8
(0.2)
P 		136.1
(-2.7)
P 		162.1
(-1.7)
A 		127.8
(-3)
P 		253.4
(1.8)
P 		156
C 226.3
(1.8)
P 		196.4
(0.4)
P 		204.6
(0.8)
P 		229.5
(1.9)
P 		123
(-3)
P 		252.4
(3)
P 		129
avr 252.7
(2.4) 		197.3
(-0.1) 		194.9
(-0.2) 		198.2
(-0) 		133.2
(-3) 		265.3
(3) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 137
(3)
P 		33.7
(-3)
P 		39
(-2.7)
P 		50.8
(-2)
P 		103
B 130.7
(3)
P 		38.3
(-2.4)
P 		27.5
(-3)
P 		72
(-0.4)
P 		103
C 120.4
(3)
P 		47.7
(-3)
P 		65
(-1.6)
P 		57.5
(-2.2)
P 		73
avr 129.4
(3) 		39.9
(-3) 		43.8
(-2.7) 		60.1
(-1.6) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 45.7
(-2.8)
P 		65.7
(1.9)
P 		53.2
(-1.1)
P 		51.5
(-1.5)
P 		44.9
(-3)
P 		70.6
(3)
P 		26
B 98.7
(3)
P 		70.2
(0.4)
P 		33
(-3)
P 		42.9
(-2.1)
A 		51.9
(-1.3)
P 		94.5
(2.6)
P 		66
C 83.9
(2.9)
P 		59.9
(-0.3)
P 		52.1
(-1.3)
P 		46.1
(-2.2)
P 		39.8
(-3)
P 		84.5
(3)
P 		45
avr 76.1
(1.9) 		65.3
(0.2) 		46.1
(-2.9) 		46.8
(-2.8) 		45.5
(-3) 		83.2
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175776_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19913
Sequence Type Exemplar sequence
Representative Public ID 5579405 NCBI
Target Description g5579405 /REP_DB=GenBank Identifier /GB=AF164113.1 /PROTEIN_GB=AAD45535.1 /CHR=5 /FEA=Mapped Transcript /DEF=zinc finger protein STAT-B
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028825(11), NM_171513(11), NM_073111(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028825 NCBI Caenorhabditis elegans F58E6.1a (F58E6.1) mRNA, complete cds. 11/11 None
NM_171513 NCBI Caenorhabditis elegans F58E6.1b (F58E6.1) mRNA, complete cds. 11/11 None
NM_073111 NCBI Caenorhabditis elegans AQuaPorin or aquaglyceroporin related family member (aqp-4) (aqp-4) mRNA, complete cds. 11/11 None
F40F9.9 ENSEMBL cdna:known chromosome:CEL140:V:9740202:9746813:1 gene:F40F9.9 11/11 A 
F58E6.1a ENSEMBL cdna:known chromosome:CEL140:V:9742298:9748858:1 gene:F58E6.1 11/11 A 
F58E6.1b ENSEMBL cdna:known chromosome:CEL140:V:9742298:9746813:1 gene:F58E6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040363 4/11 Cross Hyb Matching Probes None
GENEFINDER00000040374 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9742159-9746813(+) 100.0 100.0
Public Domain and Genome References
Gene Title MIP transmembrane protein
Gene Symbol aqp-4
Ensembl F40F9.9
F58E6.1
Entrez Gene 179366 Entrez gene
SwissProt Q20243 EMBL-EBI
WormBase CE31345 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14714_S_AT tonoplast intrinsic protein, putative at
ATH1-121501:257313_AT tonoplast intrinsic protein, putative at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94771 Hypothetical protein F58E6.1a [Caenorhabditis elegans] ref|NP_001023996.1| F58E6.1a [Caenorhabditis elegans] 0.0
blast CAC42308 Hypothetical protein F58E6.1b [Caenorhabditis elegans] ref|NP_741599.1| F58E6.1b [Caenorhabditis elegans] 0.0
blast AAD45535 zinc finger protein STAT-B [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000425 EMBL-EBI Major intrinsic protein 2.0E-61
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.2E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023996.1 3 117-139,605-627,741-763
NP_741599.1 1 117-139
NP_505512.3 6 41-63,78-100,121-143,163-185,192-214,245-264
F40F9.9 6 41-63,78-100,121-143,163-185,192-214,245-264
F58E6.1a 3 117-139,605-627,741-763
F58E6.1b 1 117-139
Sequence
Target Sequence 
>C. ELEGANS:175776_S_AT
tgttttgttggttcgattttcggatattgaatacggaaaaattaagatttcagtaaagaa
taggaatggtggtaagctttcaaaatcatcaaatgaattcaaggaagttcgtgaaaaacg
aagggtaccgaaatctataccagttatctcagtttttctctgtttcagaaaaattttccc
gtacttttcttttaaatatacttttatgaataggactgcattgaacagaagaagaaaaaa
cctcgcaaataatccaaaaaatatttttaaatattcaaaaaacaacataaacttatcata
ttctaacatagttgccagcaacattctacgcacttttacatttataaattcaaaatcaaa
taatttttgttccgaaaaccgaatcaactctgtttgttttctagaaattcgtcatcactg
gtacgagcacgctgatctaaatgctcgatccctgaattcagaacttctttcaaatcacaa
gttctccgacgtcgatctcatttatccagaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTGTTGGTTCGATTTTCGGAT 485 561 1827 Antisense
GAAATCTATACCAGTTATCTCAGTT 315 363 1956 Antisense
TATCTCAGTTTTTCTCTGTTTCAGA 518 659 1971 Antisense
TATTCTAACATAGTTGCCAGCAACA 222 663 2125 Antisense
AGCAACATTCTACGCACTTTTACAT 186 77 2143 Antisense
ACCGAATCAACTCTGTTTGTTTTCT 497 89 2204 Antisense
TCTAGAAATTCGTCATCACTGGTAC 633 609 2226 Antisense
TCACTGGTACGAGCACGCTGATCTA 423 627 2241 Antisense
CTAAATGCTCGATCCCTGAATTCAG 120 227 2263 Antisense
AAATCACAAGTTCTCCGACGTCGAT 90 71 2298 Antisense
GACGTCGATCTCATTTATCCAGACA 484 377 2314 Antisense
Sequence Source GenBank