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[175771_at]

Description g5731332 /REP_DB=GenBank Identifier /GB=AF172090.1 /PROTEIN_GB=AAD48874.1 /CHR=3 /FEA=Mapped Transcript /DEF=homeodomain protein NOB-1A
Cluster 6grp_high1_10_10 > 59      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_total > 46      4grp_total > 02      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 98.2
(-2.2)
P 		72
(-2.7)
P 		57.2
(-3)
P 		366.9
(3)
P 		310
B 93.7
(-2.3)
P 		57.2
(-3)
P 		79.6
(-2.6)
P 		384.5
(3)
P 		327
C 70
(-3)
P 		92.1
(-2.5)
P 		69.9
(-3)
P 		340.9
(3)
P 		271
avr 87.3
(-2.6) 		73.8
(-2.9) 		68.9
(-3) 		364.1
(3) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 76.3
(0.1)
A 		119.3
(3)
P 		73.3
(-0.1)
P 		77.6
(0.2)
P 		30.2
(-3)
A 		89
(1)
P 		89
B 43.7
(-3)
P 		62.2
(-1)
P 		46.1
(-2.7)
A 		79
(0.9)
A 		82.3
(1.2)
P 		98.4
(3)
P 		55
C 122.5
(3)
P 		90.1
(1)
P 		68.5
(-0.3)
P 		24.9
(-3)
A 		84.1
(0.6)
P 		89.2
(1)
P 		98
avr 80.8
(0.8) 		90.5
(2.7) 		62.6
(-2.6) 		60.5
(-3) 		65.5
(-2.1) 		92.2
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 35.7
(0.2)
P 		15.6
(-2.9)
P 		15
(-3)
P 		53.7
(3)
P 		39
B 29.9
(-1.6)
P 		14.1
(-3)
P 		18.4
(-2.6)
P 		81.9
(3)
P 		68
C 23.2
(-3)
P 		26.5
(-2.4)
P 		24.4
(-2.8)
P 		57.5
(3)
P 		34
avr 29.6
(-1.6) 		18.7
(-3) 		19.3
(-2.9) 		64.4
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14.1
(-2.1)
A 		42.4
(3)
P 		16
(-1.8)
P 		19.7
(-1.1)
P 		9.1
(-3)
A 		21.7
(-0.7)
P 		33
B 15.2
(-2.1)
P 		20.7
(-0.8)
P 		11.2
(-3)
A 		20.9
(-0.7)
A 		33.4
(2.2)
P 		36.7
(3)
P 		26
C 45.4
(3)
P 		27.5
(0.3)
P 		17.4
(-1.2)
P 		5
(-3)
A 		27.2
(0.3)
P 		29.8
(0.7)
P 		40
avr 24.9
(0.9) 		30.2
(3) 		14.9
(-3) 		15.2
(-2.9) 		23.2
(0.3) 		29.4
(2.7) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175771_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19828
Sequence Type Exemplar sequence
Representative Public ID 5731332 NCBI
Target Description g5731332 /REP_DB=GenBank Identifier /GB=AF172090.1 /PROTEIN_GB=AAD48874.1 /CHR=3 /FEA=Mapped Transcript /DEF=homeodomain protein NOB-1A
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027770 NCBI Caenorhabditis elegans kNOB-like posterior (NO Backside) family member (nob-1) (nob-1) mRNA, complete cds. 11/11 None
Y75B8A.2b ENSEMBL cdna:known chromosome:CEL140:III:12077664:12084192:-1 gene:Y75B8A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020064 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020174 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176641 2 1 NM_001027770 175771_at (11)
NM_067174 175709_at (11), 191468_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12077659-12084188(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y75B8A.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70124 Hypothetical protein Y75B8A.2b [Caenorhabditis elegans] ref|NP_001022941.1| kNOB-like posterior (NO Backside) family member (nob-1) [Caenorhabditis elegans] gb|AAD48874.1| homeodomain protein NOB-1A [Caenorhabditis elegans] 1.0E-104
blast CAA22093 Hypothetical protein Y75B8A.2a [Caenorhabditis elegans] ref|NP_499575.3| kNOB-like posterior (NO Backside) family member (nob-1) [Caenorhabditis elegans] gb|AAD48875.1| NOB-1B protein [Caenorhabditis elegans] 1.0E-79
blast CAE75108 Hypothetical protein CBG23031 [Caenorhabditis briggsae] 2.0E-37
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 9.99999968265523E-21
Pfam IPR001356 EMBL-EBI Homeobox 4.8E-24
Sequence
Target Sequence 
>C. ELEGANS:175771_AT
gtctggttccagaatcgacgaatgaaggacaagaaactgcgtcaacgacattccgggcca
ttcccccacggtgctccagtcactccgtgcatcgagcgattgatcaactgattttctcta
tttacacaaagtgttctaactaatgatttttttctgattcttattcattattcaatttgc
tctcttctctctcaatttcataatttttgtcccaaatctcgtttgcacagggttgtgttt
ttagcccattcttcgttctctccaaccggtacctagacaccgttcactatattttttccc
ttattgtttgtcgtcctctttgactcttttttcgattcaagttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGGTTCCAGAATCGACGAATGA 82 473 613 Antisense
TCAACTGATTTTCTCTATTTACACA 188 631 716 Antisense
CTTATTCATTATTCAATTTGCTCTC 176 223 772 Antisense
CTCTTCTCTCTCAATTTCATAATTT 146 231 794 Antisense
TTTTGTCCCAAATCTCGTTTGCACA 604 675 817 Antisense
CAAATCTCGTTTGCACAGGGTTGTG 2 193 825 Antisense
CAGGGTTGTGTTTTTAGCCCATTCT 28 207 840 Antisense
CCGGTACCTAGACACCGTTCACTAT 190 263 878 Antisense
TAGACACCGTTCACTATATTTTTTC 161 653 886 Antisense
TTATTGTTTGTCGTCCTCTTTGACT 309 679 913 Antisense
GACTCTTTTTTCGATTCAAGTTCAA 93 375 934 Antisense
Sequence Source GenBank