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[175770_s_at]

Description g3002916 /REP_DB=GenBank Identifier /GB=AF042398.1 /PROTEIN_GB=AAC08949.1 /CHR=X /FEA=Mapped Transcript /DEF=FMRFamide-like peptide 11b
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 57      6grp_total > 35      4grp_total > 04      6grp_highest_sub > Cu      6grp_cgc > 34      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6975
1 2 3 4 range
A 2796.1
(-1.8)
P 		1634.6
(-2.8)
P 		1426.6
(-3)
P 		8401.4
(3)
P 		6975
B 2884.9
(-1.7)
P 		1636.6
(-3)
P 		1693.4
(-2.9)
P 		7561
(3)
P 		5924
C 2750.4
(-1.7)
P 		1903.8
(-2.7)
P 		1614.7
(-3)
P 		6917.6
(3)
P 		5303
avr 2810.5
(-1.8) 		1725
(-2.9) 		1578.2
(-3) 		7626.7
(3) 		6049

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1355
1 2 3 4 5 6 range
A 2271.7
(1.3)
P 		2582.3
(3)
P 		2480
(2.4)
P 		2058.5
(0.1)
P 		1510.8
(-3)
P 		2039
(-0)
P 		1072
B 2542.6
(1.6)
P 		2759.9
(3)
P 		2539.3
(1.6)
P 		1810
(-3)
P 		2023.9
(-1.6)
P 		2300.8
(0.1)
P 		950
C 2865.8
(3)
P 		2402.2
(0.8)
P 		2046.5
(-0.9)
P 		1606.3
(-3)
P 		2174.7
(-0.3)
P 		2467.2
(1.1)
P 		1260
avr 2560
(2.8) 		2581.5
(3) 		2355.3
(1.2) 		1824.9
(-3) 		1903.1
(-2.4) 		2269
(0.5) 		757
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1256
1 2 3 4 range
A 1018.1
(1.5)
P 		354.8
(-3)
P 		372.9
(-2.9)
P 		1229.8
(3)
P 		875
B 920
(-0.4)
P 		404.2
(-2.9)
P 		392.4
(-3)
P 		1611.2
(3)
P 		1219
C 910.4
(0.5)
P 		547.4
(-3)
P 		562.8
(-2.9)
P 		1166.4
(3)
P 		619
avr 949.5
(0.4) 		435.5
(-3) 		442.7
(-3) 		1335.8
(3) 		900

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 739
1 2 3 4 5 6 range
A 418.8
(-3)
P 		918.4
(3)
P 		540.1
(-1.5)
P 		522.1
(-1.8)
P 		455.9
(-2.6)
P 		496.4
(-2.1)
P 		500
B 884.7
(2.5)
P 		918.7
(3)
P 		616.6
(-1.1)
P 		479.4
(-3)
P 		822.3
(1.7)
P 		858
(2.2)
P 		439
C 1062.2
(3)
P 		733
(0.3)
P 		520.9
(-1.4)
P 		323
(-3)
P 		703.7
(0.1)
P 		825.9
(1.1)
P 		739
avr 788.6
(2) 		856.7
(3) 		559.2
(-1.3) 		441.5
(-3) 		660.6
(0.2) 		726.8
(1.1) 		415
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175770_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19988
Sequence Type Exemplar sequence
Representative Public ID 3002916 NCBI
Target Description g3002916 /REP_DB=GenBank Identifier /GB=AF042398.1 /PROTEIN_GB=AAC08949.1 /CHR=X /FEA=Mapped Transcript /DEF=FMRFamide-like peptide 11b
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029583(11), NM_001029581(11), NM_001029582(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029583 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-11) (flp-11) mRNA, complete cds. 11/11 None
NM_001029581 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-11) (flp-11) mRNA, complete cds. 11/11 None
NM_001029582 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-11) (flp-11) mRNA, complete cds. 11/11 None
SNAP00000043393 ENSEMBL cdna:SNAP chromosome:CEL140:X:4676674:4678037:-1 10/11 None
GENEFINDER00000043403 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4677525:4678037:-1 11/11 None
K02G10.4c ENSEMBL cdna:known chromosome:CEL140:X:4677313:4678037:-1 gene:K02G10.4 11/11 None
K02G10.4a ENSEMBL cdna:known chromosome:CEL140:X:4677349:4678061:-1 gene:K02G10.4 11/11 None
K02G10.4b ENSEMBL cdna:known chromosome:CEL140:X:4677525:4678037:-1 gene:K02G10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4677525-4678038(-) 100.0 100.0
Public Domain and Genome References
Ensembl K02G10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39250 Fmrf-like peptide protein 11, isoform a [Caenorhabditis elegans] ref|NP_001024752.1| FMRF-Like Peptide family member (flp-11) [Caenorhabditis elegans] gb|AAC08948.1| FMRFamide-like peptide 11a [Caenorhabditis elegans] 2.0E-46
blast CAE68632 Hypothetical protein CBG14520 [Caenorhabditis briggsae] 9.0E-41
blast AAM54174 Fmrf-like peptide protein 11, isoform b [Caenorhabditis elegans] ref|NP_001024753.1| FMRF-Like Peptide family member (flp-11) [Caenorhabditis elegans] gb|AAC08949.1| FMRFamide-like peptide 11b [Caenorhabditis elegans] 2.0E-36
blast AAP68932 Fmrf-like peptide protein 11, isoform c [Caenorhabditis elegans] ref|NP_001024754.1| FMRF-Like Peptide family member (flp-11) [Caenorhabditis elegans] 1.0E-31
blast AAK39250 Fmrf-like peptide protein 11, isoform a [Caenorhabditis elegans] ref|NP_001024752.1| FMRF-Like Peptide family member (flp-11) [Caenorhabditis elegans] gb|AAC08948.1| FMRFamide-like peptide 11a [Caenorhabditis elegans] 5.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024754.1 1 4-23
NP_001024752.1 1 4-23
NP_001024753.1 1 4-23
K02G10.4c 1 4-23
K02G10.4a 1 4-23
K02G10.4b 1 4-23
SNAP00000043393 1 4-23
GENEFINDER00000043403 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:175770_S_AT
gactcaattctctgcattggcacttctccttattgtcttcgttgccgcttcttttgctca
atcttatgatgacgtcagtgcggagaaacgtgccatgcggaacgccttggttcgatttgg
aagagctagtggtggaatgagaaatgctctcgttagattcggaaagaggtctccattgga
cgaggaagactttgctccagagagcccactccagggaaaacggaacggtgccccacaacc
atttgaagctcaagttcgccaacaacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCAATTCTCTGCATTGGCACTT 528 373 15 Antisense
CCGCTTCTTTTGCTCAATCTTATGA 376 263 59 Antisense
CAATCTTATGATGACGTCAGTGCGG 172 181 73 Antisense
GTCAGTGCGGAGAAACGTGCCATGC 251 465 88 Antisense
GGAGAAACGTGCCATGCGGAACGCC 403 517 96 Antisense
GCGGAACGCCTTGGTTCGATTTGGA 125 293 111 Antisense
GAGAAATGCTCTCGTTAGATTCGGA 419 393 153 Antisense
CGGAAAGAGGTCTCCATTGGACGAG 703 239 174 Antisense
GGACGAGGAAGACTTTGCTCCAGAG 146 525 192 Antisense
TCCAGAGAGCCCACTCCAGGGAAAA 378 589 210 Antisense
GAAGCTCAAGTTCGCCAACAACAAG 161 343 259 Antisense
Sequence Source GenBank