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[175769_s_at]

Description g4063371 /REP_DB=GenBank Identifier /GB=AF088287.1 /PROTEIN_GB=AAC98294.1 /CHR=2 /FEA=Mapped Transcript /DEF=caspase-related protein 1C
Cluster 6grp_total > 10      4grp_total > 26      6grp_cgc > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 7.2
(-3)
A 		27.2
(-1.9)
A 		68.9
(0.5)
A 		113.3
(3)
A 		106
B 30
(-1.9)
A 		105.9
(3)
A 		13.4
(-3)
A 		73
(0.9)
A 		93
C 44.5
(0.9)
A 		37.7
(-0.2)
A 		19.8
(-3)
A 		58.1
(3)
A 		38
avr 27.2
(-3) 		56.9
(0.3) 		34
(-2.2) 		81.5
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 15
(-3)
A 		102.6
(3)
A 		36.7
(-1.5)
A 		61.3
(0.2)
A 		42.1
(-1.1)
A 		99.8
(2.8)
A 		88
B 63
(3)
A 		21.3
(-2.1)
A 		59.1
(2.5)
A 		32.8
(-0.7)
A 		13.5
(-3)
A 		47.5
(1.1)
A 		50
C 6.1
(-3)
A 		90.8
(3)
A 		60.5
(0.9)
A 		25.3
(-1.6)
A 		31.7
(-1.2)
A 		15.1
(-2.4)
A 		85
avr 28
(-3) 		71.6
(3) 		52.1
(0.3) 		39.8
(-1.4) 		29.1
(-2.8) 		54.1
(0.6) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 2.6
(-3)
A 		5.9
(-1.7)
A 		18
(3)
A 		16.6
(2.5)
A 		15
B 9.6
(-1.3)
A 		26.2
(3)
A 		3.1
(-3)
A 		15.5
(0.2)
A 		23
C 14.7
(3)
A 		10.8
(0)
A 		6.9
(-3)
A 		9.8
(-0.8)
A 		8
avr 9
(-3) 		14.3
(3) 		9.3
(-2.7) 		14
(2.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 2.8
(-3)
A 		36.5
(3)
A 		8
(-2.1)
A 		15.6
(-0.7)
A 		12.7
(-1.2)
A 		24.3
(0.8)
A 		34
B 21.9
(3)
A 		7.1
(-2.4)
A 		14.4
(0.3)
A 		8.7
(-1.8)
A 		5.5
(-3)
A 		17.7
(1.5)
A 		16
C 2.3
(-3)
A 		27.7
(3)
A 		15.4
(0.1)
A 		5.1
(-2.3)
A 		10.3
(-1.1)
A 		5.1
(-2.3)
A 		25
avr 9
(-3) 		23.8
(3) 		12.6
(-1.5) 		9.8
(-2.7) 		9.5
(-2.8) 		15.7
(-0.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175769_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19720
Sequence Type Exemplar sequence
Representative Public ID 4063371 NCBI
Target Description g4063371 /REP_DB=GenBank Identifier /GB=AF088287.1 /PROTEIN_GB=AAC98294.1 /CHR=2 /FEA=Mapped Transcript /DEF=caspase-related protein 1C
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027281(9), NM_001027282(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027281 NCBI Caenorhabditis elegans CaSPase family member (csp-1) (csp-1) mRNA, complete cds. 9/11 None
NM_001027282 NCBI Caenorhabditis elegans CaSPase family member (csp-1) (csp-1) mRNA, complete cds. 9/11 None
Y48E1B.13a ENSEMBL cdna:known chromosome:CEL140:II:13601100:13604953:1 gene:Y48E1B.13 9/11 A 
Y48E1B.13b ENSEMBL cdna:known chromosome:CEL140:II:13603942:13604953:1 gene:Y48E1B.13 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010076 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175007 3 2 NM_001027281 175769_s_at (9), 189201_s_at (10)
NM_001027282 175769_s_at (9), 189201_s_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13603897-13605034(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y48E1B.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07698 Hypothetical protein Y48E1B.13a [Caenorhabditis elegans] ref|NP_001022452.1| CaSPase family member (csp-1) [Caenorhabditis elegans] gb|AAC98292.1| caspase-related protein 1A [Caenorhabditis elegans] 0.0
blast CAD18879 Hypothetical protein Y48E1B.13b [Caenorhabditis elegans] ref|NP_001022453.1| CaSPase family member (csp-1) [Caenorhabditis elegans] gb|AAC98293.1| caspase-related protein 1B [Caenorhabditis elegans] 1.0E-154
blast CAB07698 Hypothetical protein Y48E1B.13a [Caenorhabditis elegans] ref|NP_001022452.1| CaSPase family member (csp-1) [Caenorhabditis elegans] gb|AAC98292.1| caspase-related protein 1A [Caenorhabditis elegans] 1.0E-154
blast CAD18880 Hypothetical protein Y48E1B.13c [Caenorhabditis elegans] ref|NP_001022454.1| CaSPase family member (csp-1) [Caenorhabditis elegans] gb|AAC98294.1| caspase-related protein 1C [Caenorhabditis elegans] 7.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 2.3E-34
Pfam IPR001309 EMBL-EBI Caspase-1, p20 8.7E-77
Pfam IPR001309 EMBL-EBI Caspase-1, p20 8.7E-77
Sequence
Target Sequence 
>C. ELEGANS:175769_S_AT
gaacatgggtgttcccgttgacggactgccagctttggaagacaaatgtgctccaatctc
gaaattttggaatttaatgatgtcacgtataatgccgggaaccttcacttcattgaacgc
cgacgtcatcatctcgttttccaccacggacgggtttacgtcttatcgagacgaagaagc
gggcacatggtatattaaatccatgtgtaaagtcttcaataagcattcaaaaactatgca
ccttctcgatatattaacggaaactggtagaaatgttgttacgaagtatgagaatgttca
agggaacgttgtattaaaacaagccccagagatattatccaggctcaccaaacaatggca
cttttcaaggtcgatgtaactgcgctccagcgcgttcgtattaaattttaatttctttgc
gttttctctgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATGGGTGTTCCCGTTGACGGA 446 349 483 Antisense
CATGGGTGTTCCCGTTGACGGACTG 143 209 486 Antisense
GTTGACGGACTGCCAGCTTTGGAAG 649 437 499 Antisense
GACGGACTGCCAGCTTTGGAAGACA 174 377 502 Antisense
AGCTTTGGAAGACAAATGTGCTCCA 479 77 513 Antisense
GATGTCACGTATAATGCCGGGAACC 484 409 561 Antisense
CACGTATAATGCCGGGAACCTTCAC 502 199 566 Antisense
AACAAGCCCCAGAGATATTATCCAG 348 135 800 Antisense
AGCCCCAGAGATATTATCCAGGCTC 393 83 804 Antisense
GCTCCAGCGCGTTCGTATTAAATTT 701 297 866 Antisense
TAATTTCTTTGCGTTTTCTCTGTAC 27 635 891 Antisense
Sequence Source GenBank