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[175762_at] Cyclic-nucleotide-gated olfactory channel

Description g1827497 /REP_DB=GenBank Identifier /GB=D86922.1 /PROTEIN_GB=BAA13180.1 /CHR=3 /FEA=Mapped Transcript /DEF=cyclic nucleotide-gated channel
Cluster 6grp_high1_10_10 > 01      4grp_high_8_8 > 13      6grp_total > 17      4grp_total > 11      6grp_cgc > 06      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 69.8
(0.5)
P 		63.6
(-0.5)
P 		46.8
(-3)
P 		86.5
(3)
P 		40
B 29.3
(-3)
P 		41.3
(-1.9)
P 		38.9
(-2.1)
A 		94.2
(3)
P 		65
C 58.4
(-1.1)
P 		45.8
(-2.5)
A 		41.5
(-3)
P 		94.9
(3)
P 		53
avr 52.5
(-1.8) 		50.2
(-2.1) 		42.4
(-3) 		91.9
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 47.9
(1.7)
P 		42.9
(1.1)
P 		57.6
(2.8)
P 		6.8
(-3)
A 		50.6
(2)
P 		59.6
(3)
A 		53
B 101.3
(3)
P 		53.9
(-0.8)
P 		30.7
(-2.7)
A 		27.3
(-3)
A 		34.5
(-2.4)
P 		40.6
(-1.9)
P 		74
C 53.5
(0.8)
P 		28.8
(-3)
P 		68
(3)
P 		46.4
(-0.3)
P 		39.2
(-1.4)
P 		30.6
(-2.7)
A 		39
avr 67.6
(3) 		41.9
(-0.8) 		52.1
(0.7) 		26.8
(-3) 		41.4
(-0.9) 		43.6
(-0.5) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 25.4
(3)
P 		13.8
(-2.3)
P 		12.2
(-3)
P 		12.7
(-2.8)
P 		13
B 9.3
(-2.8)
P 		10.2
(-2.4)
P 		9
(-3)
A 		20.1
(3)
P 		11
C 19.3
(3)
P 		13.2
(-3)
A 		14.5
(-1.7)
P 		16
(-0.2)
P 		6
avr 18
(3) 		12.4
(-2.5) 		11.9
(-3) 		16.3
(1.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 8.8
(0.1)
P 		15.3
(3)
P 		12.5
(1.8)
P 		1.7
(-3)
A 		15.3
(3)
P 		14.5
(2.6)
A 		14
B 35.2
(3)
P 		17.9
(-0.7)
P 		7.5
(-2.9)
A 		7.2
(-3)
A 		14
(-1.5)
P 		15.1
(-1.3)
P 		28
C 19.8
(3)
P 		8.8
(-3)
P 		17.3
(1.6)
P 		9.3
(-2.7)
P 		12.7
(-0.9)
P 		10.2
(-2.2)
A 		11
avr 21.3
(3) 		14
(0.1) 		12.4
(-0.5) 		6.1
(-3) 		14
(0.1) 		13.3
(-0.2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175762_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19768
Sequence Type Exemplar sequence
Representative Public ID 1827497 NCBI
Target Description g1827497 /REP_DB=GenBank Identifier /GB=D86922.1 /PROTEIN_GB=BAA13180.1 /CHR=3 /FEA=Mapped Transcript /DEF=cyclic nucleotide-gated channel
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066632(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066632 NCBI Caenorhabditis elegans abnormal CHEmotaxis family member (tax-4) (tax-4) mRNA, complete cds. 11/11 A 
ZC84.2 ENSEMBL cdna:known chromosome:CEL140:III:9181454:9185797:1 gene:ZC84.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020246 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9181432-9185793(+) 100.0 100.0
Public Domain and Genome References
Gene Title Cyclic-nucleotide-gated olfactory channel
Gene Symbol tax-4
Ensembl ZC84.2
Entrez Gene 176297 Entrez gene
SwissProt Q03611 EMBL-EBI
WormBase CE27352 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582542_AT cyclic nucleotide gated channel alpha 1 cfa
CANINE_2:CFA.3753.1.S1_AT cyclic nucleotide gated channel alpha 1 cfa
CANINE_2:CFAAFFX.3796.1.S1_S_AT cyclic nucleotide gated channel alpha 1 cfa
DROSOPHILA_2:1623394_AT dm
DROSGENOME1:147711_AT dm
CHICKEN:GGA.671.1.S1_AT cyclic nucleotide gated channel alpha 1 gga
HG-U133_PLUS_2:206417_AT cyclic nucleotide gated channel alpha 1 hs
HG-U133A:206417_AT cyclic nucleotide gated channel alpha 1 hs
HG-FOCUS:206417_AT cyclic nucleotide gated channel alpha 1 hs
HG-U133A_2:206417_AT cyclic nucleotide gated channel alpha 1 hs
HUGENEFL:S42457_AT cyclic nucleotide gated channel alpha 1 hs
U133_X3P:G4502914_3P_AT cyclic nucleotide gated channel alpha 1 hs
HG-U95AV2:37840_AT cyclic nucleotide gated channel alpha 1 hs
MU11KSUBA:M84742_S_AT cyclic nucleotide gated channel alpha 1 mm
MG-U74AV2:95389_AT cyclic nucleotide gated channel alpha 1 mm
MOE430A:1451763_AT cyclic nucleotide gated channel alpha 1 mm
MOUSE430A_2:1451763_AT cyclic nucleotide gated channel alpha 1 mm
MOUSE430_2:1451763_AT cyclic nucleotide gated channel alpha 1 mm
RN-U34:L02634_S_AT cyclic nucleotide-gated cation channel rn
RG-U34A:L02634_S_AT cyclic nucleotide-gated cation channel rn
RN-U34:U76220_AT cyclic nucleotide-gated cation channel rn
RG-U34A:U76220_AT cyclic nucleotide-gated cation channel rn
RAE230A:1370013_AT cyclic nucleotide-gated cation channel rn
RAT230_2:1370013_AT cyclic nucleotide-gated cation channel rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6811 ion transport inferred from electronic annotation QuickGO AmiGO
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5216 ion channel activity inferred from electronic annotation QuickGO AmiGO
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63418 Hypothetical protein ZC84.2 [Caenorhabditis elegans] ref|NP_499033.1| abnormal CHEmotaxis family member (tax-4) [Caenorhabditis elegans] sp|Q03611|CNG_CAEEL Cyclic-nucleotide-gated cation channel (Abnormal chemotaxis protein 4) dbj|BAA13180.1| cyclic nucleotide-gated channel [Caenorhabditis elegans] 0.0
blast CAE62779 Hypothetical protein CBG06949 [Caenorhabditis briggsae] 0.0
blast CAA61757 alpha subunit of cone photoreceptor CNG-channel [Gallus gallus] ref|NP_990552.1| cyclic nucleotide gated channel alpha 3 [Gallus gallus] sp|Q90805|CNG1_CHICK Cyclic nucleotide gated channel, cone photoreceptor, alpha subunit (CNG channel 1) (CNG-1) 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 2.8E-19
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.4E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499033.1 3 121-140,309-331,389-411
ZC84.2 3 121-140,309-331,389-411
Sequence
Target Sequence 
>C. ELEGANS:175762_AT
catttaagccgatacaaagccctggcgcgccgtcagaaaaccatgcacggtgtctcaatc
gacggcggagacatttcaactgacggtgtcgacgaacgagttcgtccaccacgtctccga
caaacaaaaacaattgatctaccaacgggaactgaatctgaatccttgctcaaatagtta
tattttttaatttttaacttgggtcatttttacaggagattaaaacctcgaaagtaacgc
ttaaatgtcaaatgctttttaaaattatagttagtttttcaaaaaaaaaaaccaagaaat
tacttatgtatgtatattattttttaattgtgtccgtaaaatttatctttttctctctca
cctaaatttttatctggttgataccggtattttcgaattttttggtcactttcatacagc
gttttaaattaatattttgttcaacaaaatccctctgtatttagaaatcacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTAAGCCGATACAAAGCCCTGG 359 207 2056 Antisense
AACTTGGGTCATTTTTACAGGAGAT 398 133 2251 Antisense
GTAACGCTTAAATGTCAAATGCTTT 493 461 2289 Antisense
TAATTGTGTCCGTAAAATTTATCTT 683 633 2380 Antisense
TTTTCTCTCTCACCTAAATTTTTAT 224 677 2404 Antisense
CTCACCTAAATTTTTATCTGGTTGA 336 229 2412 Antisense
ATCTGGTTGATACCGGTATTTTCGA 386 33 2427 Antisense
TTTCGAATTTTTTGGTCACTTTCAT 644 559 2446 Antisense
TGGTCACTTTCATACAGCGTTTTAA 363 549 2458 Antisense
TGTTCAACAAAATCCCTCTGTATTT 423 561 2493 Antisense
TCCCTCTGTATTTAGAAATCACCTC 47 597 2505 Antisense
Sequence Source GenBank