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[175758_at]

Description g156209 /REP_DB=GenBank Identifier /GB=M94671.1 /PROTEIN_GB=AAB87718.1 /CHR=2 /FEA=Mapped Transcript /DEF=beta-galactoside binding protein
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 01      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 06      6grp_total > 33      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 70      6grp_high1_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7420
1 2 3 4 range
A 6768.3
(1.6)
P 		8211.2
(2.8)
P 		8453.6
(3)
P 		1363
(-3)
P 		7091
B 8782.5
(3)
P 		7346.5
(1.8)
P 		8377.2
(2.7)
P 		1648.5
(-3)
P 		7134
C 6634
(2.3)
P 		7239.9
(3)
P 		7275.7
(3)
P 		1671.2
(-3)
P 		5605
avr 7394.9
(2.4) 		7599.2
(2.6) 		8035.5
(3) 		1560.9
(-3) 		6475

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7105
1 2 3 4 5 6 range
A 10768
(3)
P 		8306.6
(-0.6)
P 		10317.7
(2.3)
P 		7589.9
(-1.7)
P 		7357.3
(-2.1)
P 		6718.8
(-3)
P 		4049
B 10484.1
(3)
P 		9320.4
(1.6)
P 		8899.8
(1.1)
P 		8188.4
(0.3)
P 		6309.2
(-1.9)
P 		5399
(-3)
P 		5085
C 10483.9
(3)
P 		8393.1
(1.2)
P 		10411.6
(2.9)
P 		8189.3
(1)
P 		8933.8
(1.6)
P 		3662.9
(-3)
P 		6821
avr 10578.7
(3) 		8673.4
(0.9) 		9876.4
(2.2) 		7989.2
(0.1) 		7533.4
(-0.4) 		5260.2
(-3) 		5319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2601
1 2 3 4 range
A 2464.3
(3)
P 		1782.4
(1.2)
P 		2209.9
(2.3)
P 		199.5
(-3)
P 		2265
B 2800.7
(3)
P 		1814.4
(0.6)
P 		1941.2
(0.9)
P 		351.3
(-3)
P 		2449
C 2196.1
(2.1)
P 		2081.5
(1.8)
P 		2535.8
(3)
P 		281.8
(-3)
P 		2254
avr 2487
(3) 		1892.8
(1.4) 		2229
(2.3) 		277.5
(-3) 		2210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2660
1 2 3 4 5 6 range
A 1985
(-1.4)
P 		2954.2
(3)
P 		2247
(-0.2)
P 		1925
(-1.7)
P 		2220.1
(-0.3)
P 		1635.8
(-3)
P 		1318
B 3648
(3)
P 		3102.4
(1)
P 		2161.1
(-2.5)
P 		2168.8
(-2.4)
P 		2563.3
(-1)
P 		2013.3
(-3)
P 		1635
C 3885.9
(3)
P 		2561
(0)
P 		2649.9
(0.2)
P 		1646.9
(-2.1)
P 		2890.9
(0.8)
P 		1226.2
(-3)
P 		2660
avr 3173
(3) 		2872.5
(1.8) 		2352.7
(-0.2) 		1913.6
(-1.9) 		2558.1
(0.6) 		1625.1
(-3) 		1548
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19711
Sequence Type Exemplar sequence
Representative Public ID 156209 NCBI
Target Description g156209 /REP_DB=GenBank Identifier /GB=M94671.1 /PROTEIN_GB=AAB87718.1 /CHR=2 /FEA=Mapped Transcript /DEF=beta-galactoside binding protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064400(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064400 NCBI Caenorhabditis elegans W09H1.6a (galectin) mRNA, complete cds. 11/11 A 
W09H1.6a ENSEMBL cdna:known chromosome:CEL140:II:13195445:13199607:1 gene:W09H1.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174964 2 1 NM_064400 175758_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13197926-13199604(+) 100.0 100.0
Public Domain and Genome References
Ensembl W09H1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04959 Hypothetical protein W09H1.6a [Caenorhabditis elegans] ref|NP_496801.2| W09H1.6a [Caenorhabditis elegans] sp|P36573|LEC1_CAEEL 32 kDa beta-galactoside-binding lectin (32 kDa GBP) gb|AAB87718.1| beta-galactoside binding protein [Caenorhabditis elegans] dbj|BAA22942.1| 32-kDa galectin [Caenorhabditis elegans] 1.0E-162
blast CAE59442 Hypothetical protein CBG02815 [Caenorhabditis briggsae] 1.0E-159
blast CAB04960 Hypothetical protein W09H1.6b [Caenorhabditis elegans] ref|NP_001022405.1| W09H1.6b [Caenorhabditis elegans] 1.0E-157
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 7.3E-35
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 5.4E-67
Sequence
Target Sequence 
>C. ELEGANS:175758_AT
attatgtattgatatcccctgttccccctctttcttctgttatccagctctcccatttct
ctctctctcactgatcaatcttccaaaagtctactgcccctctccccccccccccccccc
aaaaagaatcatttctctattatttcgcaccggcaactgaactgtaatcccgcgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATGTATTGATATCCCCTGTTCC 132 13 826 Antisense
CTCTCTCACTGATCAATCTTCCAAA 475 231 888 Antisense
CAATCTTCCAAAAGTCTACTGCCCC 434 181 901 Antisense
CCCCCAAAAAGAATCATTTCTCTAT 491 261 941 Antisense
GAATCATTTCTCTATTATTTCGCAC 40 329 951 Antisense
TTCTCTATTATTTCGCACCGGCAAC 479 691 958 Antisense
TCTATTATTTCGCACCGGCAACTGA 625 613 961 Antisense
ATTATTTCGCACCGGCAACTGAACT 380 13 964 Antisense
TTTCGCACCGGCAACTGAACTGTAA 124 671 968 Antisense
GCACCGGCAACTGAACTGTAATCCC 187 315 972 Antisense
CAACTGAACTGTAATCCCGCGTTTT 668 187 979 Antisense
Sequence Source GenBank