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[175755_at] transcription factor OLF-1 like

Description g2981060 /REP_DB=GenBank Identifier /GB=AF052060.1 /PROTEIN_GB=AAC06226.1 /CHR=X /FEA=Mapped Transcript /DEF=Olf-1-EBF transcription factor
Cluster 4grp_high_8_8 > 36      6grp_total > 01      4grp_total > 43      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 210
(1.1)
P 		274.2
(3)
P 		160.5
(-0.4)
P 		72.8
(-3)
A 		201
B 188.8
(-2.6)
P 		347.1
(3)
P 		177.2
(-3)
P 		188.6
(-2.6)
P 		170
C 133.2
(-2.6)
P 		260.8
(3)
P 		156.8
(-1.6)
P 		124.3
(-3)
P 		137
avr 177.3
(-1.2) 		294
(3) 		164.8
(-1.7) 		128.6
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 186.3
(1)
P 		233.5
(3)
P 		120.4
(-1.8)
P 		90.7
(-3)
P 		140.8
(-0.9)
A 		127.4
(-1.5)
A 		143
B 139.1
(-1.2)
P 		243.9
(3)
P 		127
(-1.7)
P 		95.1
(-3)
P 		104.9
(-2.6)
A 		118.4
(-2.1)
P 		149
C 142.6
(0.1)
P 		190.7
(3)
P 		147.6
(0.4)
P 		90.6
(-3)
A 		108.8
(-1.9)
A 		106.8
(-2)
P 		100
avr 156
(-0.1) 		222.7
(3) 		131.7
(-1.2) 		92.1
(-3) 		118.2
(-1.8) 		117.5
(-1.8) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 76.5
(3)
P 		59.5
(1.4)
P 		42
(-0.1)
P 		10.7
(-3)
A 		66
B 60.2
(-0.4)
P 		85.7
(3)
P 		41.1
(-2.9)
P 		40.2
(-3)
P 		46
C 44.1
(-0.4)
P 		75
(3)
P 		54.7
(0.7)
P 		21
(-3)
P 		54
avr 60.3
(1.4) 		73.4
(3) 		45.9
(-0.3) 		24
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 34.3
(-1.9)
P 		83.1
(3)
P 		26.2
(-2.7)
P 		23
(-3)
P 		42.5
(-1.1)
A 		31
(-2.2)
A 		60
B 48.4
(-0.5)
P 		81.2
(3)
P 		30.8
(-2.4)
P 		25.2
(-3)
P 		42.6
(-1.1)
A 		44.1
(-1)
P 		56
C 52.8
(2.2)
P 		58.2
(3)
P 		37.6
(-0.1)
P 		18.2
(-3)
A 		35.2
(-0.5)
A 		35.7
(-0.4)
P 		40
avr 45.2
(-0.3) 		74.2
(3) 		31.5
(-1.9) 		22.1
(-3) 		40.1
(-0.9) 		36.9
(-1.3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175755_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20024
Sequence Type Exemplar sequence
Representative Public ID 2981060 NCBI
Target Description g2981060 /REP_DB=GenBank Identifier /GB=AF052060.1 /PROTEIN_GB=AAC06226.1 /CHR=X /FEA=Mapped Transcript /DEF=Olf-1-EBF transcription factor
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078052(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078052 NCBI Caenorhabditis elegans UNCoordinated family member (unc-3) (unc-3) mRNA, complete cds. 11/11 A 
Y16B4A.1 ENSEMBL cdna:known chromosome:CEL140:X:14773456:14783482:1 gene:Y16B4A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14773448-14783482(+) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor OLF-1 like
Gene Symbol unc-3
Ensembl Y16B4A.1
Entrez Gene 181573 Entrez gene
SwissProt Q93705 EMBL-EBI
WormBase CE29366 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589306_AT similar to Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell factor) cfa
CANINE_2:CFA.12330.1.A1_S_AT similar to Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell factor) cfa
CANINE_2:CFAAFFX.26525.1.S1_AT similar to Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell factor) cfa
CANINE_2:CFAAFFX.26531.1.S1_S_AT similar to Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell factor) cfa
DROSOPHILA_2:1639479_A_AT knot dm
DROSGENOME1:143207_AT knot dm
CHICKEN:GGA.276.1.S1_AT early B-cell factor gga
CHICKEN:GGA.276.2.S1_A_AT early B-cell factor gga
U133_X3P:HS.185708.0.S1_3P_AT early B-cell factor hs
HG-U133_PLUS_2:232204_AT early B-cell factor hs
HG-U133B:232204_AT early B-cell factor hs
HG-U95E:78945_AT early B-cell factor hs
HG-U133_PLUS_2:233261_AT Early B-cell factor hs
HG-U133B:233261_AT Early B-cell factor hs
HG-U133_PLUS_2:229487_AT Early B-cell factor hs
HG-U133B:229487_AT Early B-cell factor hs
HU35KSUBA:RC_AA488889_AT Early B-cell factor hs
HU35KSUBD:RC_W73890_AT Early B-cell factor hs
U133_X3P:HS.32425.0.A1_3P_AT Early B-cell factor hs
U133_X3P:HS.293916.0.S1_3P_AT Early B-cell factor hs
U133_X3P:HS.120785.0.A1_3P_AT Early B-cell factor hs
HG-U133_PLUS_2:227646_AT Early B-cell factor hs
HG-U133B:227646_AT Early B-cell factor hs
HG-U95B:57550_AT Early B-cell factor hs
HG-U95C:61699_AT Early B-cell factor hs
HG-U133_PLUS_2:237517_AT Early B-cell factor hs
HG-U133B:237517_AT Early B-cell factor hs
HG-U133_PLUS_2:244876_AT Early B-cell factor hs
HG-U133B:244876_AT Early B-cell factor hs
HG-U95B:51446_AT Early B-cell factor hs
HG-U95C:64233_AT Early B-cell factor hs
HG-U95D:68150_R_AT Early B-cell factor hs
HG-U95D:68222_AT Early B-cell factor hs
HG-U95E:76237_R_AT Early B-cell factor hs
HG-U95E:85034_AT Early B-cell factor hs
HG-U95D:87936_AT Early B-cell factor hs
HU35KSUBD:RC_AA504812_AT Early B-cell factor hs
U133_X3P:HS.191950.0.A1_3P_AT Early B-cell factor hs
U133_X3P:HS.31846.0.A1_3P_AT Early B-cell factor hs
MG-U74AV2:92535_AT early B-cell factor 1 mm
MOUSE430_2:1457441_AT early B-cell factor 1 mm
MOE430B:1457441_AT early B-cell factor 1 mm
MU11KSUBA:L12147_S_AT early B-cell factor 1 mm
MG-U74BV2:115110_AT early B-cell factor 1 mm
MG-U74CV2:171204_AT early B-cell factor 1 mm
MOE430A:1448293_AT early B-cell factor 1 mm
MOUSE430A_2:1448293_AT early B-cell factor 1 mm
MOUSE430_2:1448293_AT early B-cell factor 1 mm
MOE430A:1416301_A_AT early B-cell factor 1 mm
MOUSE430A_2:1416301_A_AT early B-cell factor 1 mm
MOUSE430_2:1416301_A_AT early B-cell factor 1 mm
MOE430A:1416302_AT early B-cell factor 1 mm
MOUSE430A_2:1416302_AT early B-cell factor 1 mm
MOUSE430_2:1416302_AT early B-cell factor 1 mm
MU19KSUBC:TC37911_AT early B-cell factor 1 mm
MOE430B:1439820_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOUSE430_2:1439820_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOE430B:1441627_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOUSE430_2:1441627_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOE430B:1459348_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOUSE430_2:1459348_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOE430B:1439644_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOUSE430_2:1439644_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOE430B:1446669_AT Early B-cell factor 1 (Ebf1), mRNA mm
MOUSE430_2:1446669_AT Early B-cell factor 1 (Ebf1), mRNA mm
MU19KSUBA:TC16216_AT Early B-cell factor 1 (Ebf1), mRNA mm
MU19KSUBA:TC17636_AT Early B-cell factor 1 (Ebf1), mRNA mm
MU19KSUBA:TC20663_AT Early B-cell factor 1 (Ebf1), mRNA mm
MU19KSUBA:TC23171_AT Early B-cell factor 1 (Ebf1), mRNA mm
RG-U34A:L24051_AT early B-cell factor 1 rn
RAE230A:1368949_AT early B-cell factor 1 rn
RAT230_2:1368949_AT early B-cell factor 1 rn
RAE230B:1379474_AT Early B-cell factor 1 rn
RAT230_2:1379474_AT Early B-cell factor 1 rn
RAE230B:1392117_AT Early B-cell factor 1 rn
RAT230_2:1392117_AT Early B-cell factor 1 rn
RAE230B:1394709_AT Early B-cell factor 1 rn
RAT230_2:1394709_AT Early B-cell factor 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03092 Hypothetical protein Y16B4A.1 [Caenorhabditis elegans] emb|CAA19442.2| Hypothetical protein Y16B4A.1 [Caenorhabditis elegans] ref|NP_510453.1| UNCoordinated family member (unc-3) [Caenorhabditis elegans] sp|Q93705|UNC3_CAEEL Transcription factor unc-3 (CEO/E) gb|AAC06226.1| Olf-1/EBF transcription factor [Caenorhabditis elegans] 0.0
blast T22089 hypothetical protein Y16B4A.1 - Caenorhabditis elegans 0.0
blast CAE63229 Hypothetical protein CBG07590 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 4.4E-18
Sequence
Target Sequence 
>C. ELEGANS:175755_AT
ctagaaatgctccaacactttccaactttccactctttctctttttctttatctttcttt
catttttttcccttaatccaaaatagtggcgcccgaacctctagaactcatttgtcttgc
gcgctcgctccacctcttgtcaataattgtattgtgatactttgaacattttcttgtcag
gaaacagagaactcatgcaaataattactttgatcttacaagtttttttcatccagttaa
tctttaatcctaaatctcaactccatacaacgatctcttagaatttttaagttaaatgta
taataatgttcgaatatttgtcgtcccacataagatgttcatgacaaccttccaaaagca
atatgattcatgaacagtattcatcaccacacccctctaataatttcacaactctatttc
atcttatcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAGAAATGCTCCAACACTTTCCAA 341 225 1552 Antisense
TCTTTTTCTTTATCTTTCTTTCATT 209 615 1591 Antisense
CCCGAACCTCTAGAACTCATTTGTC 273 259 1643 Antisense
CGCTCCACCTCTTGTCAATAATTGT 244 255 1677 Antisense
TCTTACAAGTTTTTTTCATCCAGTT 655 613 1765 Antisense
TAATCCTAAATCTCAACTCCATACA 265 635 1796 Antisense
CAACTCCATACAACGATCTCTTAGA 534 187 1809 Antisense
GTTCGAATATTTGTCGTCCCACATA 534 441 1859 Antisense
AAGATGTTCATGACAACCTTCCAAA 250 155 1883 Antisense
CCACACCCCTCTAATAATTTCACAA 373 275 1938 Antisense
CACAACTCTATTTCATCTTATCACC 251 195 1958 Antisense
Sequence Source GenBank