[Home] | [Total List]

[175754_s_at]

Description g5107205 /REP_DB=GenBank Identifier /GB=AF150109.1 /PROTEIN_GB=AAD40015.1 /CHR=4 /FEA=Mapped Transcript /DEF=small zinc finger-like protein
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 85      6grp_total > 39      4grp_total > 60      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 744
1 2 3 4 range
A 1205.7
(0.3)
P 		1454.6
(3)
P 		1373.8
(2.1)
P 		892.7
(-3)
P 		562
B 1178.3
(2.1)
P 		1162.4
(1.9)
P 		1231.5
(3)
P 		859.9
(-3)
P 		372
C 1223.7
(3)
P 		1123.5
(1.8)
P 		1215.9
(2.9)
P 		710.3
(-3)
P 		513
avr 1202.6
(2.1) 		1246.8
(2.6) 		1273.7
(3) 		821
(-3) 		453

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 775
1 2 3 4 5 6 range
A 858.4
(1.9)
P 		583.8
(-3)
P 		736.4
(-0.3)
P 		628.6
(-2.2)
P 		923.5
(3)
P 		878.9
(2.2)
P 		340
B 927.7
(0.2)
P 		1159.6
(2.5)
P 		602.1
(-3)
P 		598.8
(-3)
P 		901.1
(-0)
P 		1210.4
(3)
P 		612
C 1035.5
(2.3)
P 		1119.8
(3)
P 		711.6
(-0.6)
P 		435.9
(-3)
P 		670.6
(-0.9)
P 		689.9
(-0.8)
P 		684
avr 940.5
(2.8) 		954.4
(3) 		683.4
(-1.1) 		554.4
(-3) 		831.7
(1.2) 		926.4
(2.6) 		400
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 439
(3)
P 		315.8
(0.6)
P 		359.1
(1.4)
P 		130.7
(-3)
P 		308
B 375.8
(3)
P 		287.1
(0.2)
P 		285.4
(0.2)
P 		183.3
(-3)
P 		193
C 405.1
(2.6)
P 		323
(1)
P 		423.8
(3)
P 		119.8
(-3)
P 		304
avr 406.6
(3) 		308.6
(0.8) 		356.1
(1.8) 		144.6
(-3) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 158.2
(-3)
P 		207.6
(-0.5)
P 		160.4
(-2.9)
P 		159.4
(-2.9)
P 		278.7
(3)
P 		214
(-0.2)
P 		121
B 322.8
(0.5)
P 		386
(1.7)
P 		146.2
(-3)
P 		158.6
(-2.8)
P 		366.1
(1.3)
P 		451.4
(3)
P 		305
C 383.8
(3)
P 		341.7
(2.1)
P 		181.1
(-1.1)
P 		87.7
(-3)
P 		217
(-0.4)
P 		230.9
(-0.1)
P 		296
avr 288.3
(2.2) 		311.8
(3) 		162.6
(-2.1) 		135.2
(-3) 		287.3
(2.2) 		298.8
(2.6) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175754_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19868
Sequence Type Exemplar sequence
Representative Public ID 5107205 NCBI
Target Description g5107205 /REP_DB=GenBank Identifier /GB=AF150109.1 /PROTEIN_GB=AAD40015.1 /CHR=4 /FEA=Mapped Transcript /DEF=small zinc finger-like protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026104(11), NM_001026103(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026104 NCBI Caenorhabditis elegans Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.2) (tin-9.2) mRNA, complete cds. 11/11 None
NM_001026103 NCBI Caenorhabditis elegans Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.2) (tin-9.2) mRNA, complete cds. 11/11 None
SNAP00000043350 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13099497:13100489:1 11/11 None
GENEFINDER00000043371 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13098831:13100489:1 11/11 None
B0564.1b ENSEMBL cdna:known chromosome:CEL140:IV:13098975:13100581:1 gene:B0564.1 11/11 None
B0564.1a ENSEMBL cdna:known chromosome:CEL140:IV:13099497:13100578:1 gene:B0564.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13098982-13099835(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0564.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97771 Hypothetical protein B0564.1a [Caenorhabditis elegans] ref|NP_001021274.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.2) [Caenorhabditis elegans] sp|Q17533|EXOS4_CAEEL Putative exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) 1.0E-134
blast CAE58656 Hypothetical protein CBG01825 [Caenorhabditis briggsae] 1.0E-127
blast CAE58656 Hypothetical protein CBG01825 [Caenorhabditis briggsae] 1.0E-126
blast AAH87307 LOC495942 protein [Xenopus laevis] 8.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR004217 EMBL-EBI Zn-finger, Tim10/DDP type 1.4E-10
Pfam IPR001247 EMBL-EBI 3 exoribonuclease 5.1E-13
Pfam IPR001247 EMBL-EBI 3 exoribonuclease 1.5E-53
Pfam IPR001247 EMBL-EBI 3 exoribonuclease 5.1E-13
Pfam IPR001247 EMBL-EBI 3 exoribonuclease 1.5E-53
Pfam IPR004217 EMBL-EBI Zn-finger, Tim10/DDP type 1.4E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043371 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:175754_S_AT
acatcatctctgaacatggtttccgtattgacggccgccgtcccgctcagattcgtaaca
ttaacactcgtcttggcttgaacagaaatgcggagggaagctgttatctggaacatggta
ataccaaggttctttgtgcagtttatggtccgtatgaaggcaaatcgtcaaaaagaatcg
aagataaatgtgccattgtttgtcagtatagtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCATCTCTGAACATGGTTTCCG 52 107 385 Antisense
CATGGTTTCCGTATTGACGGCCGCC 699 167 399 Antisense
GTCCCGCTCAGATTCGTAACATTAA 514 475 424 Antisense
GTAACATTAACACTCGTCTTGGCTT 71 461 439 Antisense
AACACTCGTCTTGGCTTGAACAGAA 359 135 447 Antisense
AATGCGGAGGGAAGCTGTTATCTGG 387 165 471 Antisense
TAATACCAAGGTTCTTTGTGCAGTT 90 635 503 Antisense
CTTTGTGCAGTTTATGGTCCGTATG 493 223 516 Antisense
GGTCCGTATGAAGGCAAATCGTCAA 64 503 531 Antisense
GAATCGAAGATAAATGTGCCATTGT 420 329 559 Antisense
GTGCCATTGTTTGTCAGTATAGTGC 578 477 574 Antisense
Sequence Source GenBank