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[175753_at]

Description g5107205 /REP_DB=GenBank Identifier /GB=AF150109.1 /PROTEIN_GB=AAD40015.1 /CHR=4 /FEA=Mapped Transcript /DEF=small zinc finger-like protein
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 29      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 74      6grp_total > 27      4grp_total > 59      6grp_highest_sub > 01_02      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1209
1 2 3 4 range
A 938.9
(1.1)
P 		1113.4
(2.3)
P 		1213.5
(3)
P 		330.5
(-3)
P 		883
B 1065.2
(0.4)
P 		1106.3
(0.6)
P 		1539
(3)
P 		460.5
(-3)
P 		1079
C 1151.7
(1.4)
P 		1154.9
(1.4)
P 		1431
(3)
P 		370.8
(-3)
P 		1060
avr 1051.9
(1) 		1124.9
(1.4) 		1394.5
(3) 		387.3
(-3) 		1007

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 449
1 2 3 4 5 6 range
A 761.7
(3)
P 		757.8
(2.9)
P 		554.2
(0)
P 		344.8
(-3)
P 		643.5
(1.3)
P 		621.9
(1)
P 		417
B 728.8
(1.3)
P 		783.4
(3)
P 		646.6
(-1.3)
P 		688.4
(-0)
P 		732.1
(1.4)
P 		594.2
(-3)
P 		189
C 793.9
(3)
P 		739.6
(1.8)
P 		513.3
(-3)
P 		533.4
(-2.6)
P 		605.9
(-1)
P 		662.1
(0.2)
P 		281
avr 761.5
(3) 		760.3
(3) 		571.4
(-1.8) 		522.2
(-3) 		660.5
(0.5) 		626.1
(-0.4) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 450
1 2 3 4 range
A 341.9
(3)
P 		241.7
(1)
P 		317.2
(2.5)
P 		48.4
(-3)
P 		294
B 339.7
(2.6)
P 		273.2
(1.1)
P 		356.6
(3)
P 		98.1
(-3)
P 		259
C 381.3
(1.4)
P 		332
(0.7)
P 		498.7
(3)
P 		62.5
(-3)
P 		436
avr 354.3
(2.3) 		282.3
(1) 		390.8
(3) 		69.7
(-3) 		321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 140.4
(-1.3)
P 		269.5
(3)
P 		120.7
(-1.9)
P 		87.5
(-3)
P 		194.2
(0.5)
P 		151.4
(-0.9)
P 		182
B 253.6
(1.1)
P 		260.8
(1.4)
P 		157
(-3)
P 		182.3
(-1.9)
P 		297.4
(3)
P 		221.6
(-0.2)
P 		140
C 294.3
(3)
P 		225.7
(0.8)
P 		130.6
(-2.3)
P 		107.3
(-3)
P 		196.1
(-0.2)
P 		221.6
(0.7)
P 		187
avr 229.4
(1.9) 		252
(3) 		136.1
(-2.5) 		125.7
(-3) 		229.2
(1.9) 		198.2
(0.4) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175753_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19868
Sequence Type Exemplar sequence
Representative Public ID 5107205 NCBI
Target Description g5107205 /REP_DB=GenBank Identifier /GB=AF150109.1 /PROTEIN_GB=AAD40015.1 /CHR=4 /FEA=Mapped Transcript /DEF=small zinc finger-like protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026104 NCBI Caenorhabditis elegans Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.2) (tin-9.2) mRNA, complete cds. 11/11 None
SNAP00000043349 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13099093:13099447:1 9/11 None
GENEFINDER00000043371 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13098831:13100489:1 11/11 None
B0564.1b ENSEMBL cdna:known chromosome:CEL140:IV:13098975:13100581:1 gene:B0564.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178261 2 1 NM_001026104 175753_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13098982-13099835(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0564.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97771 Hypothetical protein B0564.1a [Caenorhabditis elegans] ref|NP_001021274.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.2) [Caenorhabditis elegans] sp|Q17533|EXOS4_CAEEL Putative exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) 1.0E-134
blast CAE58656 Hypothetical protein CBG01825 [Caenorhabditis briggsae] 1.0E-126
blast AAH87307 LOC495942 protein [Xenopus laevis] 2.0E-57
blast CAI46556 Hypothetical protein B0564.1b [Caenorhabditis elegans] ref|NP_001021275.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.2) [Caenorhabditis elegans] gb|AAD40015.1| small zinc finger-like protein [Caenorhabditis elegans] sp|Q9Y0V2|TIM9B_CAEEL Mitochondrial import inner membrane translocase subunit Tim9B 6.0E-45
blast CAI46556 Hypothetical protein B0564.1b [Caenorhabditis elegans] ref|NP_001021275.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.2) [Caenorhabditis elegans] gb|AAD40015.1| small zinc finger-like protein [Caenorhabditis elegans] sp|Q9Y0V2|TIM9B_CAEEL Mitochondrial import inner membrane translocase subunit Tim9B 4.0E-39
blast EAL87203 mitochondrial intermembrane space translocase subunit Tim9, putative [Aspergillus fumigatus Af293] ref|XP_749241.1| mitochondrial intermembrane space translocase subunit Tim9 [Aspergillus fumigatus Af293] 2.0E-9
blast AAO44913 Transport to inner mitochondrial membrane (yeast tim) protein 9.1, isoform b [Caenorhabditis elegans] ref|NP_001021307.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-9.1) [Caenorhabditis elegans] 9.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR004217 EMBL-EBI Zn-finger, Tim10/DDP type 1.4E-10
Pfam IPR004217 EMBL-EBI Zn-finger, Tim10/DDP type 2.3E-6
Pfam IPR001247 EMBL-EBI 3 exoribonuclease 5.1E-13
Pfam IPR001247 EMBL-EBI 3 exoribonuclease 1.5E-53
Pfam IPR004217 EMBL-EBI Zn-finger, Tim10/DDP type 1.4E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043371 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:175753_AT
cgttgactgttttatgctttatgaatactattcaaaatattcaacagcttcgtgaatttc
taaccgtctacaacactctcagcgaacgttgtttcaacgcctgcgctcgtgactacacca
catcaacactcacaaaggacgaagggtcctgtgtcagtcaatgtattgacaagcagatgc
tagtgaaccgtcggtttatgctagtattcgcagaacaagcaccaaaagcacttttcaagc
aaggagagcaatcgccaaccgaagcaatcaaatccgctaagccagagccagcggtcccag
ctccagaagccactcctgttgaaactact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTGACTGTTTTATGCTTTATGAA 672 247 29 Antisense
GCTTCGTGAATTTCTAACCGTCTAC 319 303 75 Antisense
CGTCTACAACACTCTCAGCGAACGT 24 245 93 Antisense
GCGAACGTTGTTTCAACGCCTGCGC 477 289 110 Antisense
TACACCACATCAACACTCACAAAGG 647 643 142 Antisense
GGACGAAGGGTCCTGTGTCAGTCAA 45 523 165 Antisense
AGCAGATGCTAGTGAACCGTCGGTT 122 77 200 Antisense
ACCGTCGGTTTATGCTAGTATTCGC 489 87 215 Antisense
GCAAGGAGAGCAATCGCCAACCGAA 435 321 267 Antisense
TCAAATCCGCTAAGCCAGAGCCAGC 334 629 296 Antisense
AGAAGCCACTCCTGTTGAAACTACT 171 71 333 Antisense
Sequence Source GenBank