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[175752_s_at]

Description g3138976 /REP_DB=GenBank Identifier /GB=AF055911.1 /PROTEIN_GB=AAC39022.1 /CHR=3 /FEA=Mapped Transcript /DEF=odorant response protein ODR-4
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 09      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 66      6grp_total > 92      4grp_total > 60      6grp_cgc > 97      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 692
1 2 3 4 range
A 1403.5
(0)
P 		1336.7
(-0.7)
P 		1679.2
(3)
P 		1119.8
(-3)
P 		559
B 1500.4
(0.4)
P 		1724.5
(3)
P 		1702.3
(2.7)
P 		1211.2
(-3)
P 		513
C 1411.5
(1.4)
P 		1314.4
(0.2)
P 		1555.2
(3)
P 		1032.1
(-3)
P 		523
avr 1438.5
(0.6) 		1458.5
(0.9) 		1645.6
(3) 		1121
(-3) 		525

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 610
1 2 3 4 5 6 range
A 1815.4
(3)
P 		1614.6
(0.1)
P 		1404.6
(-3)
P 		1680
(1)
P 		1784.2
(2.5)
P 		1418.2
(-2.8)
P 		411
B 1369.8
(-3)
P 		1607.5
(0.4)
P 		1369
(-3)
P 		1471.4
(-1.5)
P 		1787.9
(3)
P 		1435.9
(-2)
P 		419
C 1410.6
(0.5)
P 		1560.6
(3)
P 		1487.9
(1.8)
P 		1491.9
(1.8)
P 		1354.7
(-0.5)
P 		1205.8
(-3)
P 		355
avr 1531.9
(0.7) 		1594.2
(2) 		1420.5
(-1.6) 		1547.8
(1) 		1642.3
(3) 		1353.3
(-3) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 511
(3)
P 		290.2
(-0.8)
P 		439
(1.8)
P 		163.9
(-3)
P 		347
B 478.5
(3)
P 		425.9
(1.6)
P 		394.5
(0.7)
P 		258.1
(-3)
P 		220
C 467.2
(1.8)
P 		377.9
(0.3)
P 		542.1
(3)
P 		174
(-3)
P 		368
avr 485.6
(3) 		364.7
(0.5) 		458.5
(2.4) 		198.7
(-3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 334.6
(-2.4)
P 		574.2
(3)
P 		305.9
(-3)
P 		426.1
(-0.3)
P 		538.4
(2.2)
P 		345.3
(-2.1)
P 		268
B 476.6
(-0.8)
P 		535.1
(0.1)
P 		332.4
(-3)
P 		389.7
(-2.1)
P 		726.4
(3)
P 		535.4
(0.1)
P 		394
C 522.8
(3)
P 		476.2
(1.7)
P 		378.7
(-0.9)
P 		300
(-3)
P 		438.3
(0.7)
P 		403.6
(-0.2)
P 		223
avr 444.7
(-0.2) 		528.5
(2) 		339
(-3) 		371.9
(-2.1) 		567.7
(3) 		428.1
(-0.7) 		229
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175752_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19825
Sequence Type Exemplar sequence
Representative Public ID 3138976 NCBI
Target Description g3138976 /REP_DB=GenBank Identifier /GB=AF055911.1 /PROTEIN_GB=AAC39022.1 /CHR=3 /FEA=Mapped Transcript /DEF=odorant response protein ODR-4
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027643(11), NM_001027644(11), NM_066076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027643 NCBI Caenorhabditis elegans ODoRant response abnormal family member (odr-4) (odr-4) mRNA, complete cds. 11/11 None
NM_001027644 NCBI Caenorhabditis elegans ODoRant response abnormal family member (odr-4) (odr-4) mRNA, complete cds. 11/11 None
NM_066076 NCBI Caenorhabditis elegans ODoRant response abnormal family member (odr-4) (odr-4) mRNA, complete cds. 11/11 None
SNAP00000008387 ENSEMBL cdna:SNAP chromosome:CEL140:III:6732071:6733779:1 11/11 None
GENEFINDER00000008390 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6732071:6733779:1 11/11 None
Y102E9.1b ENSEMBL cdna:known chromosome:CEL140:III:6730714:6733779:1 gene:Y102E9.1 11/11 None
Y102E9.1a.5 ENSEMBL cdna:known chromosome:CEL140:III:6731014:6733779:1 gene:Y102E9.1 11/11 None
Y102E9.1c ENSEMBL cdna:known chromosome:CEL140:III:6731167:6733857:1 gene:Y102E9.1 11/11 None
Y102E9.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:6731587:6733868:1 gene:Y102E9.1 11/11 None
Y102E9.1a.4 ENSEMBL cdna:known chromosome:CEL140:III:6731970:6733779:1 gene:Y102E9.1 11/11 None
Y102E9.1a.3 ENSEMBL cdna:known chromosome:CEL140:III:6732096:6733779:1 gene:Y102E9.1 11/11 None
Y102E9.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:6732102:6733779:1 gene:Y102E9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6732094-6733867(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y102E9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84808 Odorant response abnormal protein 4, isoform b [Caenorhabditis elegans] ref|NP_001022814.1| ODoRant response abnormal family member (odr-4) [Caenorhabditis elegans] 0.0
blast AAN84809 Odorant response abnormal protein 4, isoform c [Caenorhabditis elegans] ref|NP_001022815.1| ODoRant response abnormal family member (odr-4) [Caenorhabditis elegans] 0.0
blast AAA93427 Odorant response abnormal protein 4, isoform a [Caenorhabditis elegans] ref|NP_498477.1| ODoRant response abnormal family member (odr-4) [Caenorhabditis elegans] gb|AAC39022.1| odorant response protein ODR-4 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022814.1 1 452-474
NP_001022815.1 1 450-472
NP_498477.1 1 422-444
Y102E9.1b 1 452-474
Y102E9.1a.5 1 422-444
Y102E9.1c 1 450-472
Y102E9.1a.2 1 422-444
Y102E9.1a.4 1 422-444
Y102E9.1a.3 1 422-444
Y102E9.1a.1 1 422-444
SNAP00000008387 1 450-472
GENEFINDER00000008390 1 432-454
Sequence
Target Sequence 
>C. ELEGANS:175752_S_AT
gatattgcgtccaacatgcacgaagttctttttgacattgaagttcgcgcagctgttcca
atcagatcaacagtgaaggacgcaatccgagcaatcaagcatcatttagtcaggaatctg
tttgcaagagttgaacttcactacgaatcgatggaagttgttgaagaggaacgatcacca
aaaactggaatcaccgtccatcaactacctcgtccagctactacagtactctacacacat
ccagcaattctcatcaatgatttcctctttgaggctgataatgtagaagatgcacagaag
aattttgatgacatgatggatttacagacaagcattgaacacgtggatgaaggctgggaa
cgcgcgctgacaccagaagagatggaagctgtgcgaacaccgattgaggatcttcatttc
gttgacttcgatggatcaagcgattcatggtgcacaacgaaaaccatactgattactatt
gcattgattatcggactcttggcatccattatttatttcactgtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTGCGTCCAACATGCACGAAG 150 427 825 Antisense
TCGCGCAGCTGTTCCAATCAGATCA 398 599 869 Antisense
GACGCAATCCGAGCAATCAAGCATC 15 381 903 Antisense
CTCGTCCAGCTACTACAGTACTCTA 207 233 1033 Antisense
TCTACACACATCCAGCAATTCTCAT 302 613 1054 Antisense
TGGATGAAGGCTGGGAACGCGCGCT 460 549 1168 Antisense
AACGCGCGCTGACACCAGAAGAGAT 565 143 1183 Antisense
GAAGCTGTGCGAACACCGATTGAGG 644 343 1209 Antisense
GAGGATCTTCATTTCGTTGACTTCG 442 401 1230 Antisense
GATTATCGGACTCTTGGCATCCATT 28 431 1310 Antisense
GCATCCATTATTTATTTCACTGTAG 240 309 1326 Antisense
Sequence Source GenBank