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[175750_s_at]

Description g3152401 /REP_DB=GenBank Identifier /GB=AB007815.1 /PROTEIN_GB=BAA28351.1 /CHR=5 /FEA=Mapped Transcript /DEF=matrix metalloproteinase
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 95      6grp_total > 57      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 591
1 2 3 4 range
A 852.7
(3)
P 		382.4
(-1.8)
P 		525.3
(-0.3)
P 		261.9
(-3)
P 		591
B 556
(3)
P 		537.6
(2.5)
P 		556.8
(3)
P 		332
(-3)
P 		225
C 719.7
(3)
P 		559.6
(0.4)
P 		445.1
(-1.5)
P 		350.7
(-3)
P 		369
avr 709.5
(3) 		493.2
(-0.3) 		509.1
(-0) 		314.9
(-3) 		395

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1225
1 2 3 4 5 6 range
A 664.3
(-1.5)
P 		649.1
(-1.6)
P 		676.9
(-1.4)
P 		559.2
(-2.3)
P 		475.5
(-3)
P 		1228.5
(3)
P 		753
B 812.2
(-0.2)
P 		767.3
(-0.6)
P 		623.9
(-1.9)
P 		496.5
(-3)
P 		523.6
(-2.8)
P 		1168.5
(3)
P 		672
C 910.7
(-0.3)
P 		703.7
(-1.3)
P 		590.7
(-1.8)
P 		353.5
(-3)
P 		497.9
(-2.3)
P 		1578.4
(3)
P 		1225
avr 795.7
(-0.7) 		706.7
(-1.3) 		630.5
(-1.9) 		469.7
(-3) 		499
(-2.8) 		1325.1
(3) 		855
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 310.5
(3)
P 		83
(-2)
P 		137.3
(-0.8)
P 		38.3
(-3)
P 		272
B 177.3
(3)
P 		132.8
(0.5)
P 		129
(0.3)
P 		70.7
(-3)
P 		107
C 238.2
(3)
P 		160.9
(0.4)
P 		155.1
(0.2)
P 		59.1
(-3)
P 		179
avr 242
(3) 		125.6
(-0.8) 		140.5
(-0.3) 		56
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 122.5
(-3)
P 		230.8
(0.7)
P 		147.4
(-2.2)
P 		141.8
(-2.3)
P 		143.5
(-2.3)
P 		299.1
(3)
P 		177
B 282.6
(-0)
P 		255.4
(-0.6)
P 		151.5
(-2.6)
P 		131.5
(-3)
P 		212.7
(-1.4)
P 		435.7
(3)
P 		304
C 337.6
(0.5)
P 		214.7
(-1.1)
P 		150.3
(-2)
P 		71.1
(-3)
P 		161.1
(-1.8)
P 		528.4
(3)
P 		457
avr 247.6
(-0.4) 		233.6
(-0.7) 		149.7
(-2.3) 		114.8
(-3) 		172.4
(-1.9) 		421.1
(3) 		306
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175750_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19944
Sequence Type Exemplar sequence
Representative Public ID 3152401 NCBI
Target Description g3152401 /REP_DB=GenBank Identifier /GB=AB007815.1 /PROTEIN_GB=BAA28351.1 /CHR=5 /FEA=Mapped Transcript /DEF=matrix metalloproteinase
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071389 NCBI Caenorhabditis elegans C31B8.8 (C31B8.8) mRNA, complete cds. 11/11 None
SNAP00000035069 ENSEMBL cdna:SNAP chromosome:CEL140:V:2905685:2909407:-1 11/11 None
GENEFINDER00000035080 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2905685:2909407:-1 11/11 None
C31B8.8 ENSEMBL cdna:known chromosome:CEL140:V:2905597:2909510:-1 gene:C31B8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2905664-2909413(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31B8.8
Entrez Gene 178748 Entrez gene
SwissProt O16901 EMBL-EBI
WormBase CE26674 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264716_AT matrixin family protein at
ATGENOME1:13361_AT matrixin family protein at
CANINE:1582822_AT matrix metallopeptidase 14 (membrane-inserted) cfa
CANINE_2:CFA.3690.1.S1_S_AT matrix metallopeptidase 14 (membrane-inserted) cfa
CANINE_2:CFAAFFX.17451.1.S1_AT matrix metallopeptidase 14 (membrane-inserted) cfa
DROSOPHILA_2:1623160_AT Matrix metalloproteinase 1 dm
DROSOPHILA_2:1632204_AT Matrix metalloproteinase 1 dm
DROSOPHILA_2:1625761_A_AT Matrix metalloproteinase 1 dm
DROSGENOME1:147882_AT Matrix metalloproteinase 1 dm
HG-U95AV2:34747_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133_PLUS_2:217279_X_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133A_2:217279_X_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133A:217279_X_AT matrix metallopeptidase 14 (membrane-inserted) hs
HC-G110:1301_S_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U95AV2:160020_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133A_2:160020_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-FOCUS:160020_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133_PLUS_2:160020_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133A:160020_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133A_2:202828_S_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133A:202828_S_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133_PLUS_2:202828_S_AT matrix metallopeptidase 14 (membrane-inserted) hs
HUGENEFL:Z48481_AT matrix metallopeptidase 14 (membrane-inserted) hs
HUGENEFL:X83535_S_AT matrix metallopeptidase 14 (membrane-inserted) hs
U133_X3P:HS.2399.1.S1_3P_X_AT matrix metallopeptidase 14 (membrane-inserted) hs
U133_X3P:HS.2399.1.S1_3P_S_AT matrix metallopeptidase 14 (membrane-inserted) hs
U133_X3P:HS.2399.1.S1_3P_AT matrix metallopeptidase 14 (membrane-inserted) hs
U133_X3P:HS.2399.1.S1_3P_A_AT matrix metallopeptidase 14 (membrane-inserted) hs
U133_X3P:HS.2399.0.S2_3P_S_AT matrix metallopeptidase 14 (membrane-inserted) hs
U133_X3P:4870053_3P_S_AT matrix metallopeptidase 14 (membrane-inserted) hs
U133_X3P:217279_3P_X_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133A_2:202827_S_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133_PLUS_2:202827_S_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U133A:202827_S_AT matrix metallopeptidase 14 (membrane-inserted) hs
HG-U95E:73002_AT matrix metallopeptidase 14 (membrane-inserted) hs
MU11KSUBA:U54984_S_AT matrix metallopeptidase 14 (membrane-inserted) mm
MG-U74AV2:160118_AT matrix metallopeptidase 14 (membrane-inserted) mm
MOE430A:1448383_AT matrix metallopeptidase 14 (membrane-inserted) mm
MOUSE430A_2:1448383_AT matrix metallopeptidase 14 (membrane-inserted) mm
MOUSE430_2:1448383_AT matrix metallopeptidase 14 (membrane-inserted) mm
MOE430A:1416572_AT matrix metallopeptidase 14 (membrane-inserted) mm
MOUSE430A_2:1416572_AT matrix metallopeptidase 14 (membrane-inserted) mm
MOUSE430_2:1416572_AT matrix metallopeptidase 14 (membrane-inserted) mm
MOE430B:1440920_AT Matrix metallopeptidase 14 (membrane-inserted) (Mmp14), mRNA mm
MOUSE430_2:1440920_AT Matrix metallopeptidase 14 (membrane-inserted) (Mmp14), mRNA mm
MU19KSUBA:TC18677_S_AT Matrix metallopeptidase 14 (membrane-inserted) (Mmp14), mRNA mm
MU19KSUBB:TC27167_F_AT Matrix metallopeptidase 14 (membrane-inserted) (Mmp14), mRNA mm
MU19KSUBC:TC39785_AT Matrix metallopeptidase 14 (membrane-inserted) (Mmp14), mRNA mm
RG-U34A:X83537_AT matrix metalloproteinase 14 (membrane-inserted) rn
RG-U34C:RC_AI070584_AT matrix metalloproteinase 14 (membrane-inserted) rn
RAE230A:1367860_A_AT matrix metalloproteinase 14 (membrane-inserted) rn
RAT230_2:1367860_A_AT matrix metalloproteinase 14 (membrane-inserted) rn
RAE230B:1378225_AT Matrix metalloproteinase 14 (membrane-inserted) rn
RAT230_2:1378225_AT Matrix metalloproteinase 14 (membrane-inserted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5578 extracellular matrix (sensu Metazoa) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503790 C31B8.8 [Caenorhabditis elegans] gb|AAG23982.2| Hypothetical protein C31B8.8 [Caenorhabditis elegans] dbj|BAA28351.1| matrix metalloproteinase [Caenorhabditis elegans] 0.0
blast T32166 hypothetical protein C31B8.8 - Caenorhabditis elegans 0.0
blast CAE62373 Hypothetical protein CBG06459 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001818 EMBL-EBI Peptidase M10A and M12B, matrixin and adamalysin 3.0E-38
Pfam IPR001818 EMBL-EBI Peptidase M10A and M12B, matrixin and adamalysin 1.4E-6
Sequence
Target Sequence 
>C. ELEGANS:175750_S_AT
gttccagtggaagttccggcggtggatgcccatcacacatcgacgcgtacactccgagct
catccttctcctacgcattctctggctcacaagtctacacaattagtgggaccaaggtca
caaaagttcagtctatccacgacctgtttccatctgctccaacgcctgtcaatgctgctc
tctggaatccgatttctggctccatgctgctctttagtagcaaccgggtgtatagctact
atttttcgaacattcgtcaaatcttccaaatggacagcggattcccaaaaactcttccat
cagacctaggattttccgtctcgggagctcttcgctggattaacgggcatcagattttga
tgagcagcggtgacgagtttgcagtctatgatgagttttggaatcaggttacgctgaaga
atagaatctcatcttatttcccgaacttgccacgtggtgttaaaggagttgaatctccag
ccggatctgtcatcactgccttcacttcgaatcaagtgttcgaatataactctagaacca
aatccatcggacgtcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCAGTGGAAGTTCCGGCGGTGG 186 429 1172 Antisense
TCTCTGGCTCACAAGTCTACACAAT 381 611 1250 Antisense
AAAGTTCAGTCTATCCACGACCTGT 249 121 1294 Antisense
TGGAATCCGATTTCTGGCTCCATGC 338 545 1354 Antisense
GCTCCATGCTGCTCTTTAGTAGCAA 551 297 1370 Antisense
AGCGGATTCCCAAAAACTCTTCCAT 214 73 1447 Antisense
CAGACCTAGGATTTTCCGTCTCGGG 669 203 1472 Antisense
GAGCTCTTCGCTGGATTAACGGGCA 606 387 1496 Antisense
GAATCTCATCTTATTTCCCGAACTT 602 327 1595 Antisense
TCACTGCCTTCACTTCGAATCAAGT 208 627 1664 Antisense
GAACCAAATCCATCGGACGTCAATC 272 345 1706 Antisense
Sequence Source GenBank