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[175749_s_at]

Description g9622255 /REP_DB=GenBank Identifier /GB=AF170425.1 /PROTEIN_GB=AAF89696.1 /CHR=1 /FEA=Mapped Transcript /DEF=putative MAP-like protein
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 29      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 74      6grp_total > 27      4grp_total > 55      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 531
1 2 3 4 range
A 954.9
(3)
P 		423.7
(-3)
P 		658.9
(-0.3)
P 		535.6
(-1.7)
P 		531
B 586.2
(3)
P 		577.1
(2.4)
P 		502.1
(-3)
P 		542.8
(-0.1)
P 		84
C 902.4
(3)
P 		623.8
(-1.8)
P 		586.4
(-2.5)
P 		555.4
(-3)
P 		347
avr 814.5
(3) 		541.5
(-3) 		582.5
(-2.1) 		544.6
(-2.9) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 358
1 2 3 4 5 6 range
A 766.6
(3)
P 		696.5
(1.6)
P 		457.4
(-3)
P 		581.5
(-0.6)
P 		650
(0.7)
P 		748.8
(2.7)
P 		309
B 815.5
(3)
P 		640.3
(-0.3)
P 		492.9
(-3)
P 		604
(-0.9)
P 		583
(-1.3)
P 		630.8
(-0.4)
P 		323
C 620.9
(-0.5)
P 		720.7
(1.5)
P 		794.7
(3)
P 		496.4
(-3)
P 		556.6
(-1.8)
P 		548.4
(-2)
P 		298
avr 734.3
(3) 		685.8
(1.3) 		581.7
(-2.3) 		560.6
(-3) 		596.5
(-1.8) 		642.7
(-0.2) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 347.7
(3)
P 		92
(-2.7)
P 		172.2
(-0.9)
P 		78.4
(-3)
P 		269
B 186.9
(3)
P 		142.5
(-0.7)
P 		116.3
(-2.9)
P 		115.7
(-3)
P 		71
C 298.7
(3)
P 		179.4
(-0.5)
P 		204.4
(0.2)
P 		93.7
(-3)
P 		205
avr 277.8
(3) 		138
(-1.6) 		164.3
(-0.7) 		95.9
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 141.3
(-1.3)
P 		247.7
(3)
P 		99.6
(-3)
P 		147.5
(-1.1)
P 		196.2
(0.9)
P 		182.3
(0.4)
P 		148
B 283.7
(3)
P 		213.1
(0.4)
P 		119.7
(-3)
P 		160
(-1.5)
P 		236.9
(1.3)
P 		235.2
(1.2)
P 		164
C 230.1
(3)
P 		219.9
(2.5)
P 		202.3
(1.7)
P 		99.8
(-3)
P 		180.1
(0.7)
P 		183.6
(0.9)
P 		130
avr 218.4
(2.4) 		226.9
(3) 		140.5
(-2.7) 		135.8
(-3) 		204.4
(1.5) 		200.4
(1.3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175749_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19666
Sequence Type Exemplar sequence
Representative Public ID 9622255 NCBI
Target Description g9622255 /REP_DB=GenBank Identifier /GB=AF170425.1 /PROTEIN_GB=AAF89696.1 /CHR=1 /FEA=Mapped Transcript /DEF=putative MAP-like protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025858(11), NM_059539(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025858 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-21) (pqn-21) mRNA, complete cds. 11/11 None
NM_059539 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-21) (pqn-21) mRNA, complete cds. 11/11 A 
C37A2.5b ENSEMBL cdna:known chromosome:CEL140:I:6782110:6788040:-1 gene:C37A2.5 11/11 None
C37A2.5a ENSEMBL cdna:known chromosome:CEL140:I:6782110:6788044:-1 gene:C37A2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6782031-6787975(-) 98.5 99.76
Public Domain and Genome References
Ensembl C37A2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68236 Prion-like-(q/n-rich)-domain-bearing protein protein 21, isoform a [Caenorhabditis elegans] ref|NP_001021029.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-21) [Caenorhabditis elegans] gb|AAF89696.1| putative MAP-like protein [Caenorhabditis elegans] 0.0
blast AAN84846 Prion-like-(q/n-rich)-domain-bearing protein protein 21, isoform b [Caenorhabditis elegans] ref|NP_491940.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-21) [Caenorhabditis elegans] 0.0
blast T30155 hypothetical protein C37A2.5 - Caenorhabditis elegans 1.0E-157
Sequence
Target Sequence 
>C. ELEGANS:175749_S_AT
tcaattgactgaaaccggtgcctgtttaattatcaataattgttgtgctccatcattgct
tcatagagattactttatttgagtaacactgaaaagtgttttgtttgtattaaactatta
ctatctgatgcctagactgtctttgaagttgagaattatttattctttatctcaagatac
agacacttcccttaccattttcttctcgaacagagtaacattgttaaattatatgaagcc
tccttttctcatacagtgcccaaatgatttatctcgttctctttgttgcatcctctccct
catgtctacaaaaaacacacaccgaaccacaaatttcctccatcgccgactcattgctct
cttgattcaaaaatgtttttttggtcttttattgacaaaaattgttttacctttttgctc
gtttgactgaatacatcttcagtgcttttggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTGACTGAAACCGGTGCCTGT 357 633 2395 Antisense
TAATTGTTGTGCTCCATCATTGCTT 245 635 2431 Antisense
ACTATCTGATGCCTAGACTGTCTTT 642 101 2514 Antisense
CCTTACCATTTTCTTCTCGAACAGA 204 259 2584 Antisense
TATGAAGCCTCCTTTTCTCATACAG 420 655 2626 Antisense
TGATTTATCTCGTTCTCTTTGTTGC 219 565 2659 Antisense
CCTCTCCCTCATGTCTACAAAAAAC 682 267 2686 Antisense
CACACACCGAACCACAAATTTCCTC 417 193 2710 Antisense
CGACTCATTGCTCTCTTGATTCAAA 663 251 2741 Antisense
TTTACCTTTTTGCTCGTTTGACTGA 242 673 2800 Antisense
GAATACATCTTCAGTGCTTTTGGTT 130 327 2823 Antisense
Sequence Source GenBank