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[175748_s_at] SET domain

Description g7417256 /REP_DB=GenBank Identifier /GB=AF233290.1 /PROTEIN_GB=AAF62516.1 /CHR=5 /FEA=Mapped Transcript /DEF=maternal-effect sterile 4
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 59      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 165.8
(-1.3)
P 		291
(3)
P 		208.1
(0.2)
P 		115.8
(-3)
P 		175
B 237.5
(3)
P 		200.2
(1)
P 		205.3
(1.2)
P 		127.6
(-3)
P 		110
C 203.4
(0.8)
P 		206.2
(1)
P 		235.6
(3)
P 		148.9
(-3)
P 		87
avr 202.2
(1.2) 		232.5
(3) 		216.3
(2) 		130.8
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 681
1 2 3 4 5 6 range
A 290.7
(-1.3)
P 		143
(-2.8)
P 		132.7
(-3)
P 		127.9
(-3)
P 		410.9
(-0.1)
P 		717
(3)
P 		589
B 211.8
(-2.5)
P 		184.5
(-2.8)
P 		160
(-3)
P 		211.8
(-2.5)
P 		277.7
(-1.9)
P 		809
(3)
P 		649
C 199
(-2.5)
P 		195.1
(-2.5)
P 		149.7
(-3)
P 		196.3
(-2.5)
P 		320.5
(-1.2)
P 		735.1
(3)
P 		585
avr 233.8
(-2.1) 		174.2
(-2.7) 		147.5
(-3) 		178.7
(-2.7) 		336.4
(-1.1) 		753.7
(3) 		606
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 60.4
(2.6)
P 		63.2
(3)
P 		54.4
(1.9)
P 		17
(-3)
P 		46
B 75.7
(3)
P 		49.5
(-0.2)
P 		47.6
(-0.5)
P 		27.2
(-3)
P 		49
C 67.3
(1.4)
P 		59.3
(0.6)
P 		82.1
(3)
P 		25.1
(-3)
P 		57
avr 67.8
(3) 		57.3
(1.6) 		61.4
(2.1) 		23.1
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 53.6
(-2)
P 		50.8
(-2.1)
P 		28.9
(-3)
P 		32.4
(-2.9)
P 		124
(0.9)
P 		174.6
(3)
P 		146
B 73.7
(-2.2)
P 		61.4
(-2.5)
P 		38.9
(-3)
P 		56.1
(-2.6)
P 		112.8
(-1.3)
P 		301.7
(3)
P 		263
C 73.8
(-2)
P 		59.5
(-2.4)
P 		38.1
(-3)
P 		39.5
(-3)
P 		103.7
(-1.1)
P 		246.1
(3)
P 		208
avr 67
(-2.1) 		57.2
(-2.4) 		35.3
(-3) 		42.7
(-2.8) 		113.5
(-0.7) 		240.8
(3) 		206
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175748_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19921
Sequence Type Exemplar sequence
Representative Public ID 7417256 NCBI
Target Description g7417256 /REP_DB=GenBank Identifier /GB=AF233290.1 /PROTEIN_GB=AAF62516.1 /CHR=5 /FEA=Mapped Transcript /DEF=maternal-effect sterile 4
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073932 NCBI Caenorhabditis elegans Maternal Effect Sterile family member (mes-4) (mes-4) mRNA, complete cds. 11/11 A 
Y2H9A.1 ENSEMBL cdna:known chromosome:CEL140:V:13435648:13440136:-1 gene:Y2H9A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13435644-13440138(-) 100.0 100.0
Public Domain and Genome References
Gene Title SET domain
Gene Symbol mes-4
Ensembl Y2H9A.1
Entrez Gene 179824 Entrez gene
SwissProt Q9NH52 EMBL-EBI
WormBase CE27781 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16276 Hypothetical protein Y2H9A.1 [Caenorhabditis elegans] ref|NP_506333.1| Maternal Effect Sterile family member (mes-4) [Caenorhabditis elegans] gb|AAF62516.1| maternal-effect sterile 4 [Caenorhabditis elegans] sp|Q9NH52|MES4_CAEEL Probable histone methyltransferase mes-4 protein (Maternal-effect sterile 4 protein) 0.0
blast T26577 hypothetical protein Y2H9A.1 - Caenorhabditis elegans 0.0
blast CAE62592 Hypothetical protein CBG06706 [Caenorhabditis briggsae] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 4.4E-38
Sequence
Target Sequence 
>C. ELEGANS:175748_S_AT
gaaataatatgctgtctcgcccaattgaactctttccaatagtcttccaagtactaaatt
atgattttacttcaattagtttcaatcaacagtgccctcattctttttaatcgtactatg
agtttttcctggactgtcgacacaatttttggaaacgctgaaattcatttgaccaacgtt
caaagaataacgaagactttcctattcatcttttttgaaaattattttcacactaaacta
ggggttttattattgctttaaccattgctttcattcacttgtcatttttttttccctatg
tgttctttcgttcttgttactgcgtcccatcatatcgataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATAATATGCTGTCTCGCCCAAT 372 363 2749 Antisense
TAGTTTCAATCAACAGTGCCCTCAT 41 655 2825 Antisense
TGCCCTCATTCTTTTTAATCGTACT 77 585 2841 Antisense
TGAGTTTTTCCTGGACTGTCGACAC 310 567 2867 Antisense
GCTGAAATTCATTTGACCAACGTTC 376 295 2905 Antisense
AGACTTTCCTATTCATCTTTTTTGA 576 71 2942 Antisense
ATTATTGCTTTAACCATTGCTTTCA 662 13 2997 Antisense
ATTGCTTTCATTCACTTGTCATTTT 209 7 3012 Antisense
TGTCATTTTTTTTTCCCTATGTGTT 382 559 3028 Antisense
TGTTCTTTCGTTCTTGTTACTGCGT 572 561 3049 Antisense
TTACTGCGTCCCATCATATCGATAA 198 683 3065 Antisense
Sequence Source GenBank