[Home] | [Total List]

[175746_at] carboxylesterase

Description g5148937 /REP_DB=GenBank Identifier /GB=AF025378.3 /PROTEIN_GB=AAC14016.2 /CHR=1 /FEA=Mapped Transcript /DEF=acetylcholinesterase
Cluster 6grp_total > 40      4grp_total > 19      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 46.1
(-1.1)
A 		34.7
(-2.5)
A 		30.5
(-3)
A 		78.9
(3)
P 		48
B 39
(1.9)
M 		32.5
(-0)
A 		22.4
(-3)
A 		42.7
(3)
A 		20
C 15.7
(-3)
A 		54.2
(1)
P 		20.3
(-2.5)
A 		73.1
(3)
P 		57
avr 33.6
(-1.6) 		40.5
(-0.6) 		24.4
(-3) 		64.9
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 53.6
(3)
A 		37.1
(-1.7)
P 		41
(-0.6)
A 		36.8
(-1.8)
A 		32.5
(-3)
A 		40.8
(-0.6)
A 		21
B 31.2
(2)
A 		36.5
(2.9)
M 		36.8
(3)
A 		34.6
(2.6)
A 		3.5
(-3)
A 		15.2
(-0.9)
A 		33
C 19
(-1.7)
A 		21.4
(-0.9)
A 		28.9
(1.6)
A 		33
(3)
A 		28.7
(1.5)
A 		15.3
(-3)
A 		18
avr 34.6
(2.6) 		31.7
(1.3) 		35.6
(3) 		34.8
(2.7) 		21.6
(-3) 		23.8
(-2.1) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 16.8
(3)
A 		7.5
(-3)
A 		8
(-2.7)
A 		11.6
(-0.4)
P 		9
B 12.4
(3)
M 		8
(-0.7)
A 		5.2
(-3)
A 		9.1
(0.2)
A 		7
C 5.2
(-3)
A 		15.6
(3)
P 		7.1
(-1.9)
A 		12.3
(1.1)
P 		10
avr 11.5
(3) 		10.4
(1.6) 		6.8
(-3) 		11
(2.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.9
(-1.6)
A 		13.2
(3)
P 		8.9
(-3)
A 		9.3
(-2.4)
A 		9.8
(-1.7)
A 		9.9
(-1.6)
A 		4
B 10.9
(2.3)
A 		12.2
(3)
M 		8.9
(1.2)
A 		9.2
(1.3)
A 		1.4
(-3)
A 		5.7
(-0.6)
A 		11
C 7
(-0.3)
A 		6.5
(-1)
A 		7.4
(0.3)
A 		6.6
(-0.9)
A 		9.3
(3)
A 		5.1
(-3)
A 		4
avr 9.3
(0.9) 		10.6
(3) 		8.4
(-0.5) 		8.4
(-0.5) 		6.8
(-3) 		6.9
(-2.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175746_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19639
Sequence Type Exemplar sequence
Representative Public ID 5148937 NCBI
Target Description g5148937 /REP_DB=GenBank Identifier /GB=AF025378.3 /PROTEIN_GB=AAC14016.2 /CHR=1 /FEA=Mapped Transcript /DEF=acetylcholinesterase
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058740 NCBI Caenorhabditis elegans Y44E3A.2 (carboxylesterase) mRNA, complete cds. 11/11 A 
SNAP00000005137 ENSEMBL cdna:SNAP chromosome:CEL140:I:3302198:3307466:-1 11/11 None
GENEFINDER00000005145 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3302206:3307466:-1 11/11 None
Y44E3A.2 ENSEMBL cdna:known chromosome:CEL140:I:3301517:3307466:-1 gene:Y44E3A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3302197-3307466(-) 100.0 100.0
Public Domain and Genome References
Gene Title carboxylesterase
Gene Symbol ace-2
Ensembl Y44E3A.2
Entrez Gene 171905 Entrez gene
SwissProt O61371 EMBL-EBI
WormBase CE28363 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5623 cell inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4104 cholinesterase activity inferred from electronic annotation QuickGO AmiGO
3990 acetylcholinesterase activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491141 Y44E3A.2 [Caenorhabditis elegans] gb|AAC78228.2| Abnormal acetylcholinesterase protein 2 [Caenorhabditis elegans] gb|AAC14016.2| acetylcholinesterase [Caenorhabditis elegans] 0.0
blast AAC14019 acetylcholinesterase class B [Caenorhabditis briggsae] 0.0
blast CAE68981 Hypothetical protein CBG14965 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175746_AT
ggaagaaccgactcattttggccgcaatataacaaaatcgagcggaaggcgattgagctg
ggagagacaacattacaagggaagcatcgaatcatttctgatgttcatggaggattttgt
agaatgattgatgaggcaaaggcgtttgtgaaacagaaaaatgcaaacgactgccgtaca
actcgaaaatccgcatccaccgaagatctgaccagctccagctcaacgacctacctcttc
tccataattgtttatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGAACCGACTCATTTTGGCCGC 446 529 1615 Antisense
GACTCATTTTGGCCGCAATATAACA 516 373 1624 Antisense
GAGCGGAAGGCGATTGAGCTGGGAG 127 387 1654 Antisense
GAGCTGGGAGAGACAACATTACAAG 229 387 1669 Antisense
GACAACATTACAAGGGAAGCATCGA 580 363 1680 Antisense
ATCGAATCATTTCTGATGTTCATGG 609 35 1700 Antisense
TGATGTTCATGGAGGATTTTGTAGA 263 561 1713 Antisense
GATGAGGCAAAGGCGTTTGTGAAAC 199 407 1744 Antisense
AATGCAAACGACTGCCGTACAACTC 621 165 1774 Antisense
CCTACCTCTTCTCCATAATTGTTTA 353 269 1844 Antisense
CCTCTTCTCCATAATTGTTTATCTG 691 267 1848 Antisense
Sequence Source GenBank