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[175743_at]

Description g984834 /REP_DB=GenBank Identifier /GB=U32275.1 /PROTEIN_GB=AAA75370.1 /CHR=3 /FEA=Mapped Transcript /DEF=serine-threonine kinase
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 84      6grp_total > 48      4grp_total > 31      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 757.2
(3)
P 		401.3
(-3)
P 		460.8
(-2)
P 		427.6
(-2.6)
P 		356
B 822.3
(3)
P 		433.2
(-2.8)
P 		418.6
(-3)
P 		670.9
(0.7)
P 		404
C 749.4
(3)
P 		423.6
(-3)
P 		522.6
(-1.2)
P 		712.5
(2.3)
P 		326
avr 776.3
(3) 		419.4
(-3) 		467.3
(-2.2) 		603.7
(0.1) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 417
1 2 3 4 5 6 range
A 752.6
(3)
P 		582.6
(0.4)
P 		442.1
(-1.7)
P 		356
(-3)
P 		710.7
(2.4)
P 		716.2
(2.4)
P 		397
B 773.1
(3)
P 		524.8
(-3)
P 		556.5
(-2.2)
P 		648.6
(-0)
P 		584
(-1.6)
P 		767.6
(2.9)
P 		248
C 647.7
(1.4)
P 		606.2
(0.7)
P 		450.5
(-2.1)
P 		517.5
(-0.9)
P 		396.9
(-3)
P 		735.8
(3)
P 		339
avr 724.5
(2.6) 		571.2
(-0.9) 		483
(-3) 		507.4
(-2.4) 		563.9
(-1.1) 		739.9
(3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 275.7
(3)
P 		87.1
(-2.3)
P 		120.5
(-1.4)
P 		62.6
(-3)
P 		213
B 262.2
(3)
P 		107
(-2.6)
P 		97
(-3)
P 		143
(-1.3)
P 		165
C 248.1
(3)
P 		121.8
(-2.9)
P 		182.1
(-0.1)
P 		120.1
(-3)
P 		128
avr 262
(3) 		105.3
(-3) 		133.2
(-1.9) 		108.6
(-2.9) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 138.7
(-0.7)
P 		207.2
(2.7)
P 		96.3
(-2.7)
P 		90.3
(-3)
P 		214.4
(3)
P 		174.4
(1.1)
P 		124
B 269
(2.3)
P 		174.7
(-1.4)
P 		135.1
(-3)
P 		171.8
(-1.5)
P 		237.3
(1.1)
P 		286.2
(3)
P 		151
C 240.1
(2.7)
P 		185
(0.4)
P 		114.7
(-2.6)
P 		104.1
(-3)
P 		128.4
(-2)
P 		246.3
(3)
P 		142
avr 215.9
(2) 		189
(0.7) 		115.4
(-3) 		122.1
(-2.7) 		193.4
(0.9) 		235.6
(3) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175743_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19807
Sequence Type Exemplar sequence
Representative Public ID 984834 NCBI
Target Description g984834 /REP_DB=GenBank Identifier /GB=U32275.1 /PROTEIN_GB=AAA75370.1 /CHR=3 /FEA=Mapped Transcript /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027596 NCBI Caenorhabditis elegans protein KINase family member (kin-18) (kin-18) mRNA, complete cds. 11/11 None
T17E9.1a ENSEMBL cdna:known chromosome:CEL140:III:6118567:6124006:1 gene:T17E9.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171151 6/11 Cross Hyb Matching Probes A 
T17E9.1b 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175862 2 1 NM_001027596 175743_at (11), 188597_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6118563-6124007(+) 98.6 99.66
Public Domain and Genome References
Ensembl T17E9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19437 Protein kinase protein 18, isoform a [Caenorhabditis elegans] ref|NP_001022767.1| protein KINase family member (kin-18) [Caenorhabditis elegans] sp|P46549|SULU_CAEEL Serine/threonine-protein kinase SULU gb|AAA75370.1| serine-threonine kinase 0.0
blast AAM97951 Protein kinase protein 18, isoform b [Caenorhabditis elegans] ref|NP_741172.2| protein KINase family member (kin-18) [Caenorhabditis elegans] 0.0
blast CAE73617 Hypothetical protein CBG21107 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-14
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 1.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.7E-69
Sequence
Target Sequence 
>C. ELEGANS:175743_AT
gtctcttaattctactacacttcgggtcgtctaccaattgttttctttttttgtcgtttt
atacaaaatgtatgcttgtatggacaattaattgatagtatcttccaaatatcttccatc
taattacggttccagttcgtctttttctatgttttttctgcaccaccctcattctctcac
tttctccatgtcttctcccttcttttttagctcccaaaatccaattcttctgtgatagat
gaaaaccacggctaaacccaatggggtacggtatcccgatctccgggatacagtaacccc
gaaaatacgtgcaatacttctcaactatacccaatttttcgttcctcaccttctcttcct
aatttcattcagaaacgaaactttaatcggtgctctcaacgttgttttctctattttctc
taatatttatagtctatttgatatctgaaccccatcatcatatcatatattccaatatat
ctccttctcttctaatttacttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCTTAATTCTACTACACTTCGG 539 469 3241 Antisense
TACACTTCGGGTCGTCTACCAATTG 167 639 3256 Antisense
ATCTTCCATCTAATTACGGTTCCAG 195 31 3351 Antisense
TTCCAGTTCGTCTTTTTCTATGTTT 373 699 3370 Antisense
TTTTCTATGTTTTTTCTGCACCACC 124 677 3383 Antisense
TACTTCTCAACTATACCCAATTTTT 324 641 3555 Antisense
TTAATCGGTGCTCTCAACGTTGTTT 691 673 3623 Antisense
TCAACGTTGTTTTCTCTATTTTCTC 187 631 3636 Antisense
GAACCCCATCATCATATCATATATT 619 345 3687 Antisense
ATATTCCAATATATCTCCTTCTCTT 418 19 3707 Antisense
TCTCCTTCTCTTCTAATTTACTTAT 45 611 3720 Antisense
Sequence Source GenBank