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[175742_at]

Description g156477 /REP_DB=GenBank Identifier /GB=M58582.1 /PROTEIN_GB=AAA03517.1 /CHR=2 /FEA=Mapped Transcript /DEF=kinesin-related protein
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 41      6grp_total > 35      4grp_total > 31      6grp_highest_sub > Cu      6grp_cgc > 24      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 791
1 2 3 4 range
A 1232.3
(3)
P 		532.1
(-2.8)
P 		504
(-3)
P 		662.3
(-1.7)
P 		728
B 953.1
(1.9)
P 		622.9
(-1.3)
P 		441.7
(-3)
P 		1066
(3)
P 		624
C 1072.9
(3)
P 		582.4
(-2.4)
P 		532.1
(-3)
P 		768.9
(-0.4)
P 		541
avr 1086.1
(3) 		579.1
(-2.1) 		492.6
(-3) 		832.4
(0.4) 		594

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 702
1 2 3 4 5 6 range
A 805.5
(1.6)
P 		884.2
(3)
P 		653.6
(-1.2)
P 		557
(-3)
P 		562.2
(-2.9)
P 		707.1
(-0.2)
P 		327
B 982.2
(3)
P 		949.4
(2.7)
P 		826.8
(1.3)
P 		724.2
(0.3)
P 		418.4
(-3)
P 		742
(0.4)
P 		564
C 1120.2
(3)
P 		819.8
(0.4)
P 		783.6
(0)
P 		720.6
(-0.5)
P 		435.6
(-3)
P 		620
(-1.4)
P 		685
avr 969.3
(3) 		884.5
(2) 		754.7
(0.4) 		667.3
(-0.6) 		472.1
(-3) 		689.7
(-0.4) 		497
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 448.7
(3)
P 		115.5
(-2.7)
P 		131.7
(-2.4)
P 		96.9
(-3)
P 		352
B 303.9
(3)
P 		153.9
(-1.5)
P 		102.3
(-3)
P 		227.2
(0.7)
P 		202
C 355.2
(3)
P 		167.4
(-2)
P 		185.5
(-1.5)
P 		129.6
(-3)
P 		226
avr 369.3
(3) 		145.6
(-2.8) 		139.8
(-3) 		151.2
(-2.7) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 148.5
(-2.8)
P 		314.5
(3)
P 		142.3
(-3)
P 		141.3
(-3)
P 		169.6
(-2)
P 		172.2
(-1.9)
P 		173
B 341.8
(3)
P 		316
(2.1)
P 		200.8
(-1.9)
P 		191.8
(-2.2)
P 		170
(-3)
P 		276.7
(0.7)
P 		172
C 415.2
(3)
P 		250.1
(-0.6)
P 		199.4
(-1.7)
P 		144.9
(-2.9)
P 		141
(-3)
P 		207.5
(-1.5)
P 		274
avr 301.8
(3) 		293.5
(2.7) 		180.8
(-2.1) 		159.3
(-3) 		160.2
(-3) 		218.8
(-0.5) 		143
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175742_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19729
Sequence Type Exemplar sequence
Representative Public ID 156477 NCBI
Target Description g156477 /REP_DB=GenBank Identifier /GB=M58582.1 /PROTEIN_GB=AAA03517.1 /CHR=2 /FEA=Mapped Transcript /DEF=kinesin-related protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171017 NCBI Caenorhabditis elegans UNCoordinated family member (unc-104) (unc-104) mRNA, complete cds. 11/11 A 
C52E12.2a.2 ENSEMBL cdna:known chromosome:CEL140:II:6994982:7010537:1 gene:C52E12.2 11/11 A 
C52E12.2a.1 ENSEMBL cdna:known chromosome:CEL140:II:6994982:7010547:1 gene:C52E12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174144 2 1 NM_171017 175742_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6995004-7010441(+) 99.3 100.0
Public Domain and Genome References
Ensembl C52E12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98043 Uncoordinated protein 104, isoform a [Caenorhabditis elegans] ref|NP_741019.2| UNCoordinated family member (unc-104) [Caenorhabditis elegans] sp|P23678|UN104_CAEEL Kinesin-like protein unc-104 (Uncoordinated protein 104) 0.0
blast T15822 kinesin-like protein unc-104 - Caenorhabditis elegans 0.0
blast JN0114 kinesin-related protein unc-104 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 1.20000004768372
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 2.5E-13
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.6E-19
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175742_AT
attgctgcttcataaagtatctaattttctttgctttcctatctgtttttctttctgtga
ttattcacttccttccacgatttaaatcaaaaaatcttaatttattaatttattagatct
ccgtttgatctctccattcattatttgaagtcaatatttcaaattccccagttttcctgc
aaatcaaactatggatacctgggggaattgaacattttgagaaaaagttagctaacgagt
actgtctctctctgtccctagctatttcctgttcgctttttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTGCTTCATAAAGTATCTAAT 541 5 4862 Antisense
ATCTAATTTTCTTTGCTTTCCTATC 397 31 4880 Antisense
TTCCTATCTGTTTTTCTTTCTGTGA 135 701 4897 Antisense
CTGTGATTATTCACTTCCTTCCACG 657 239 4916 Antisense
TTCACTTCCTTCCACGATTTAAATC 134 683 4925 Antisense
TTAGATCTCCGTTTGATCTCTCCAT 303 681 4974 Antisense
GAAGTCAATATTTCAAATTCCCCAG 283 337 5008 Antisense
ATTCCCCAGTTTTCCTGCAAATCAA 234 9 5024 Antisense
GGATACCTGGGGGAATTGAACATTT 494 509 5054 Antisense
CTAACGAGTACTGTCTCTCTCTGTC 635 225 5093 Antisense
TAGCTATTTCCTGTTCGCTTTTTAG 699 645 5120 Antisense
Sequence Source GenBank