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[175741_s_at]

Description g1118006 /REP_DB=GenBank Identifier /GB=U40858.1 /PROTEIN_GB=AAA83272.1 /CHR=5 /FEA=Mapped Transcript /DEF=serine-threonine kinase
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 20      6grp_total > 06      4grp_total > 47      6grp_cgc > 02      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1243
1 2 3 4 range
A 1835.6
(3)
P 		593
(-3)
P 		648.4
(-2.7)
P 		631.9
(-2.8)
P 		1243
B 1340.2
(3)
P 		781
(-2.3)
P 		705.7
(-3)
P 		751.5
(-2.6)
P 		635
C 1040.5
(3)
P 		884.4
(0.6)
P 		729.7
(-1.8)
P 		651.4
(-3)
P 		389
avr 1405.4
(3) 		752.8
(-2.4) 		694.6
(-2.9) 		678.3
(-3) 		727

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1113
1 2 3 4 5 6 range
A 1597.9
(3)
P 		1099
(-0.3)
P 		697.9
(-3)
P 		690.9
(-3)
P 		1286.8
(0.9)
P 		799.2
(-2.3)
P 		907
B 1193.3
(2.6)
P 		1237.7
(3)
P 		484.6
(-3)
P 		1109.5
(2)
P 		821.9
(-0.3)
P 		643.9
(-1.7)
P 		753
C 1430.7
(3)
P 		1216.4
(1.2)
P 		933
(-1.1)
P 		764.6
(-2.5)
P 		1055.2
(-0.1)
P 		707.6
(-3)
P 		723
avr 1407.3
(3) 		1184.4
(1.1) 		705.2
(-3) 		855
(-1.7) 		1054.6
(-0) 		716.9
(-2.9) 		702
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 668.3
(3)
P 		128.7
(-2.6)
P 		169.5
(-2.2)
P 		92.5
(-3)
P 		576
B 427.4
(3)
P 		192.9
(-2.3)
P 		163.5
(-2.9)
P 		160.1
(-3)
P 		267
C 344.4
(3)
P 		254.3
(0.7)
P 		254.3
(0.7)
P 		109.8
(-3)
P 		235
avr 480
(3) 		192
(-1.8) 		195.8
(-1.7) 		120.8
(-3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 294.6
(0.6)
P 		390.9
(3)
P 		152
(-3)
P 		175.2
(-2.4)
P 		388.3
(2.9)
P 		194.6
(-1.9)
P 		239
B 415.2
(3)
P 		412
(2.9)
P 		117.7
(-3)
P 		293.9
(0.6)
P 		333.9
(1.4)
P 		240.1
(-0.5)
P 		298
C 530.3
(3)
P 		371.2
(0.5)
P 		237.5
(-1.7)
P 		153.8
(-3)
P 		341.4
(-0)
P 		236.9
(-1.7)
P 		377
avr 413.4
(3) 		391.4
(2.5) 		169.1
(-3) 		207.6
(-2.1) 		354.5
(1.6) 		223.9
(-1.7) 		244
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175741_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19915
Sequence Type Exemplar sequence
Representative Public ID 1118006 NCBI
Target Description g1118006 /REP_DB=GenBank Identifier /GB=U40858.1 /PROTEIN_GB=AAA83272.1 /CHR=5 /FEA=Mapped Transcript /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028847(11), NM_001028848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028847 NCBI Caenorhabditis elegans abnormal embryonic PARtitioning of cytoplasm family member (par-1) (par-1) mRNA, complete cds. 11/11 None
NM_001028848 NCBI Caenorhabditis elegans abnormal embryonic PARtitioning of cytoplasm family member (par-1) (par-1) mRNA, complete cds. 11/11 None
H39E23.1a ENSEMBL cdna:known chromosome:CEL140:V:14114624:14143724:-1 gene:H39E23.1 11/11 A 
H39E23.1b ENSEMBL cdna:known chromosome:CEL140:V:14114627:14134942:-1 gene:H39E23.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14114626-14134942(-) 99.36 100.0
Public Domain and Genome References
Ensembl H39E23.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54179 Hypothetical protein H39E23.1a [Caenorhabditis elegans] emb|CAB54263.1| Hypothetical protein H39E23.1a [Caenorhabditis elegans] ref|NP_001024018.1| abnormal embryonic PARtitioning of cytoplasm family member (par-1) [Caenorhabditis elegans] 0.0
blast AAA97437 serine/threonine kinase 0.0
blast CAE61017 Hypothetical protein CBG04756 [Caenorhabditis briggsae] 0.0
blast CAB54178 Hypothetical protein H39E23.1b [Caenorhabditis elegans] emb|CAB54262.2| Hypothetical protein H39E23.1b [Caenorhabditis elegans] ref|NP_001024019.1| abnormal embryonic PARtitioning of cytoplasm family member (par-1) [Caenorhabditis elegans] gb|AAA83272.1| serine/threonine kinase 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 9.0E-76
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 6.0E-76
hanks 2.2.4 CaMK Group; CaMK II KIN1/SNF1/Nim1; p78 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR001772 EMBL-EBI Kinase-associated, C-terminal 3.7E-23
Pfam IPR000719 EMBL-EBI Protein kinase 2.3E-101
Pfam IPR001772 EMBL-EBI Kinase-associated, C-terminal 3.7E-23
Pfam IPR000719 EMBL-EBI Protein kinase 2.3E-101
Sequence
Target Sequence 
>C. ELEGANS:175741_S_AT
ttaacttctgttcaattcgtctcctcctcccaattcaacaatccccctcttccagtacgg
ttttctcttttttttttggatattttcaaattcatcgttgtaggtgattgctccccccgt
ccccctaccgtatccttgttttataaaacctctatttttgtgtcttcatcgtcgtcgccg
cttcaaattgcatttttctttttcaaacccatcgtttcatatttcgcgccttccccccga
tgatataaccaatccatcttatcttataagttttctcgatatcccattgatttaaatatt
attataattattattcgattattgactactcttctttttttaaattttttttctatgtgt
cttttagggtattcatcgcgttttttcttccttttcttttttcatattttatttttctcc
cttcccaccccagactacccataacttaccgtagtcccccctgtccccatataattctcc
atacaaccctcacaacattttcccttgtctccgaaacatttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAACTTCTGTTCAATTCGTCTCCT 429 683 3515 Antisense
TCATCGTTGTAGGTGATTGCTCCCC 509 621 3606 Antisense
CTATTTTTGTGTCTTCATCGTCGTC 70 225 3666 Antisense
GCATTTTTCTTTTTCAAACCCATCG 75 309 3704 Antisense
CAAACCCATCGTTTCATATTTCGCG 76 193 3718 Antisense
CTTCCCCCCGATGATATAACCAATC 682 217 3744 Antisense
AAGTTTTCTCGATATCCCATTGATT 150 157 3782 Antisense
CGATTATTGACTACTCTTCTTTTTT 562 247 3830 Antisense
TAGGGTATTCATCGCGTTTTTTCTT 337 653 3879 Antisense
CTGTCCCCATATAATTCTCCATACA 16 241 3975 Antisense
TTCCCTTGTCTCCGAAACATTTGTT 368 683 4014 Antisense
Sequence Source GenBank