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[175740_s_at]

Description g10567760 /REP_DB=GenBank Identifier /GB=AF283324.1 /PROTEIN_GB=AAG18576.1 /CHR=4 /FEA=Mapped Transcript /DEF=synaptojanin UNC-26C
Cluster 4grp_high_8_8 > 08      6grp_total > 11      4grp_total > 39      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 94.5
(3)
P 		55.6
(-3)
P 		78.3
(0.5)
P 		92
(2.6)
P 		39
B 89.4
(3)
P 		73.4
(-0.1)
A 		58.8
(-3)
A 		79
(1)
P 		31
C 126.5
(3)
P 		86
(-1.4)
A 		76.9
(-2.4)
P 		71.8
(-3)
P 		55
avr 103.5
(3) 		71.7
(-2.9) 		71.3
(-3) 		80.9
(-1.2) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 24.8
(-3)
A 		116.2
(3)
P 		59.3
(-0.7)
A 		46.2
(-1.6)
A 		44.7
(-1.7)
A 		47.2
(-1.5)
A 		91
B 83.3
(3)
P 		46.4
(-2.3)
P 		64.2
(0.3)
M 		68.3
(0.8)
P 		49.4
(-1.9)
P 		41.5
(-3)
P 		42
C 89.1
(2.4)
P 		94.9
(3)
P 		83.6
(1.9)
A 		34.2
(-3)
A 		64.1
(-0)
P 		39.1
(-2.5)
P 		61
avr 65.7
(0.2) 		85.8
(3) 		69
(0.7) 		49.6
(-2) 		52.7
(-1.6) 		42.6
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 34.4
(3)
P 		12.1
(-3)
P 		20.5
(-0.7)
P 		13.5
(-2.6)
P 		22
B 28.5
(3)
P 		18.1
(-1.2)
A 		13.6
(-3)
A 		16.8
(-1.7)
P 		15
C 41.9
(3)
P 		24.7
(-0.5)
A 		26.8
(-0)
P 		12.1
(-3)
P 		30
avr 34.9
(3) 		18.3
(-1.8) 		20.3
(-1.2) 		14.1
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 4.6
(-3)
A 		41.3
(3)
P 		12.9
(-1.6)
A 		11.7
(-1.8)
A 		13.5
(-1.5)
A 		11.5
(-1.9)
A 		37
B 29
(3)
P 		15.5
(-3)
P 		15.6
(-3)
M 		18.1
(-1.8)
P 		20.1
(-1)
P 		15.5
(-3)
P 		14
C 33
(3)
P 		29
(2.1)
P 		21.3
(0.3)
A 		6.9
(-3)
A 		20.7
(0.2)
P 		13.1
(-1.6)
P 		26
avr 22.2
(0.7) 		28.6
(3) 		16.6
(-1.4) 		12.2
(-3) 		18.1
(-0.8) 		13.4
(-2.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175740_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19855
Sequence Type Exemplar sequence
Representative Public ID 10567760 NCBI
Target Description g10567760 /REP_DB=GenBank Identifier /GB=AF283324.1 /PROTEIN_GB=AAG18576.1 /CHR=4 /FEA=Mapped Transcript /DEF=synaptojanin UNC-26C
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028094(11), NM_001028095(11), AF283324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028094 NCBI Caenorhabditis elegans UNCoordinated family member (unc-26) (unc-26) mRNA, complete cds. 11/11 None
NM_001028095 NCBI Caenorhabditis elegans UNCoordinated family member (unc-26) (unc-26) mRNA, complete cds. 11/11 None
AF283324 NCBI Caenorhabditis elegans synaptojanin UNC-26C (unc-26) mRNA, complete cds. 11/11 None
SNAP00000010778 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13265443:13282838:-1 11/11 None
GENEFINDER00000010795 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13265462:13272480:-1 11/11 None
JC8.10b ENSEMBL cdna:known chromosome:CEL140:IV:13261526:13272483:-1 gene:JC8.10 11/11 A 
JC8.10a ENSEMBL cdna:known chromosome:CEL140:IV:13261526:13272483:-1 gene:JC8.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13267062-13272491(-) 99.55 99.55
Public Domain and Genome References
Ensembl JC8.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC44311 Hypothetical protein JC8.10a [Caenorhabditis elegans] emb|CAB05234.2| Hypothetical protein JC8.10a [Caenorhabditis elegans] ref|NP_001023265.1| UNCoordinated family member (unc-26) [Caenorhabditis elegans] gb|AAG18575.1| synaptojanin UNC-26B [Caenorhabditis elegans] 0.0
blast CAC70127 Hypothetical protein JC8.10b [Caenorhabditis elegans] emb|CAC70096.1| Hypothetical protein JC8.10b [Caenorhabditis elegans] ref|NP_001023266.1| UNCoordinated family member (unc-26) [Caenorhabditis elegans] gb|AAG18574.1| synaptojanin UNC-26A [Caenorhabditis elegans] 0.0
blast CAE58631 Hypothetical protein CBG01799 [Caenorhabditis briggsae] 0.0
blast AAG18576 synaptojanin UNC-26C [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 5.1E-71
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.8E-44
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.8E-44
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 5.1E-71
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 8.6E-6
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 3.5E-21
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 3.4E-62
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 8.6E-6
Sequence
Target Sequence 
>C. ELEGANS:175740_S_AT
atttcgctccactagtcgactttatcgattttgattatcatgctcaaatgaagatttcca
aagaggcaattgtgcagttgaaaaagaaaatgagcccacatatgacaaagcatggatttt
tctattcaatgggaaaagaaatagtgaaacgacaaactggagtaattcgaacaaattgtc
tagattgtctggataggacgaatgccgtacaaacagccatcggacttcaaatgtcacatg
atcaagttgcatttctgaatttaaacgcgggaaaagtgaatgtagagcaacgagttgaag
agattcttcgtgatttgtggcagaaaaatggagatcagtgtagtacgatctacgcgggaa
ctggagctcttgacggaaagagcaagttgaaagacgcgtcgagatcgcttgcaagaacta
ttcagaataatttgatggatggtgcaaagcaggaatcatttgatttatttttgactggag
ccgcatatgatccgaggcttttcgatagagcatgtaatatattgccacctagtttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCGCTCCACTAGTCGACTTTAT 606 15 973 Antisense
ATGAGCCCACATATGACAAAGCATG 621 45 1062 Antisense
GACGAATGCCGTACAAACAGCCATC 206 381 1169 Antisense
ACAGCCATCGGACTTCAAATGTCAC 441 109 1185 Antisense
GATCTACGCGGGAACTGGAGCTCTT 438 417 1319 Antisense
GAAAGACGCGTCGAGATCGCTTGCA 82 361 1361 Antisense
GAGATCGCTTGCAAGAACTATTCAG 175 397 1373 Antisense
TTGATTTATTTTTGACTGGAGCCGC 699 703 1432 Antisense
GACTGGAGCCGCATATGATCCGAGG 471 375 1445 Antisense
GATCCGAGGCTTTTCGATAGAGCAT 93 415 1461 Antisense
GTAATATATTGCCACCTAGTTTGAT 484 463 1486 Antisense
Sequence Source GenBank