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[175739_s_at]

Description g10567758 /REP_DB=GenBank Identifier /GB=AF283323.1 /PROTEIN_GB=AAG18575.1 /CHR=4 /FEA=Mapped Transcript /DEF=synaptojanin UNC-26B
Cluster 6grp_high1_10_10 > 29      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_total > 28      4grp_total > 47      6grp_cgc > 03      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 113.1
(3)
P 		73.4
(-0.9)
P 		86.3
(0.4)
P 		52.3
(-3)
P 		61
B 112.6
(3)
P 		78
(-0.6)
P 		55.7
(-3)
P 		84.7
(0.1)
P 		57
C 107.6
(3)
P 		70.5
(-3)
P 		85.5
(-0.6)
P 		81.4
(-1.2)
P 		37
avr 111.1
(3) 		74
(-2.8) 		75.8
(-2.5) 		72.8
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 108.8
(3)
P 		102.5
(2.4)
P 		44.1
(-3)
P 		60.2
(-1.5)
P 		96.5
(1.9)
P 		104.2
(2.6)
P 		65
B 131
(3)
P 		107.5
(1.6)
P 		30.6
(-3)
A 		90.8
(0.6)
P 		96.1
(0.9)
P 		99.4
(1.1)
P 		100
C 120.5
(3)
P 		84.6
(0.1)
P 		93.4
(0.8)
P 		45
(-3)
A 		86.7
(0.3)
P 		64.5
(-1.5)
P 		76
avr 120.1
(3) 		98.2
(1) 		56
(-3) 		65.3
(-2.1) 		93.1
(0.5) 		89.4
(0.1) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 41.2
(3)
P 		15.9
(-1.5)
P 		22.6
(-0.3)
P 		7.7
(-3)
P 		34
B 35.9
(3)
P 		19.3
(-1.3)
P 		12.9
(-3)
P 		18
(-1.7)
P 		23
C 35.6
(3)
P 		20.3
(-1.2)
P 		29.8
(1.4)
P 		13.7
(-3)
P 		22
avr 37.6
(3) 		18.5
(-1.7) 		21.8
(-0.9) 		13.1
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 20
(-0.7)
P 		36.5
(3)
P 		9.6
(-3)
P 		15.3
(-1.7)
P 		29.1
(1.3)
P 		25.4
(0.5)
P 		27
B 45.6
(3)
P 		35.8
(1.5)
P 		7.4
(-3)
A 		24
(-0.4)
P 		39.1
(2)
P 		37.1
(1.7)
P 		38
C 44.7
(3)
P 		25.8
(-0.2)
P 		23.8
(-0.5)
P 		9
(-3)
A 		28.1
(0.2)
P 		21.6
(-0.9)
P 		36
avr 36.8
(3) 		32.7
(1.9) 		13.6
(-3) 		16.1
(-2.4) 		32.1
(1.8) 		28
(0.7) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175739_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19838
Sequence Type Exemplar sequence
Representative Public ID 10567758 NCBI
Target Description g10567758 /REP_DB=GenBank Identifier /GB=AF283323.1 /PROTEIN_GB=AAG18575.1 /CHR=4 /FEA=Mapped Transcript /DEF=synaptojanin UNC-26B
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028094(11), NM_001028095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028094 NCBI Caenorhabditis elegans UNCoordinated family member (unc-26) (unc-26) mRNA, complete cds. 11/11 None
NM_001028095 NCBI Caenorhabditis elegans UNCoordinated family member (unc-26) (unc-26) mRNA, complete cds. 11/11 None
JC8.10b ENSEMBL cdna:known chromosome:CEL140:IV:13261526:13272483:-1 gene:JC8.10 11/11 A 
JC8.10a ENSEMBL cdna:known chromosome:CEL140:IV:13261526:13272483:-1 gene:JC8.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13261531-13272491(-) 97.98 100.0
Public Domain and Genome References
Ensembl JC8.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC44311 Hypothetical protein JC8.10a [Caenorhabditis elegans] emb|CAB05234.2| Hypothetical protein JC8.10a [Caenorhabditis elegans] ref|NP_001023265.1| UNCoordinated family member (unc-26) [Caenorhabditis elegans] gb|AAG18575.1| synaptojanin UNC-26B [Caenorhabditis elegans] 0.0
blast CAC70127 Hypothetical protein JC8.10b [Caenorhabditis elegans] emb|CAC70096.1| Hypothetical protein JC8.10b [Caenorhabditis elegans] ref|NP_001023266.1| UNCoordinated family member (unc-26) [Caenorhabditis elegans] gb|AAG18574.1| synaptojanin UNC-26A [Caenorhabditis elegans] 0.0
blast CAE58631 Hypothetical protein CBG01799 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 5.1E-71
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.8E-44
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.8E-44
Sequence
Target Sequence 
>C. ELEGANS:175739_S_AT
tatttgtaggctttttttcttgtgaatatgcattcttttttctctagcaataacattttc
aggtgttccctttcccttttaacttattatatatacttatttatttcattttctttcact
tataatagggattccatctttcaaaatttctagtcattgttttctttcccactgattcga
actttgccattttcctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTGTAGGCTTTTTTTCTTGTGA 191 661 3379 Antisense
GGCTTTTTTTCTTGTGAATATGCAT 603 537 3387 Antisense
GAATATGCATTCTTTTTTCTCTAGC 39 327 3402 Antisense
CATTCTTTTTTCTCTAGCAATAACA 139 215 3409 Antisense
GCAATAACATTTTCAGGTGTTCCCT 570 321 3425 Antisense
TCCCTTTTAACTTATTATATATACT 176 599 3451 Antisense
TCATTTTCTTTCACTTATAATAGGG 253 615 3484 Antisense
AGGGATTCCATCTTTCAAAATTTCT 552 57 3505 Antisense
CCATCTTTCAAAATTTCTAGTCATT 243 271 3512 Antisense
TTTTCTTTCCCACTGATTCGAACTT 260 675 3538 Antisense
GATTCGAACTTTGCCATTTTCCTAA 92 433 3552 Antisense
Sequence Source GenBank