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[175735_at]

Description g2957269 /REP_DB=GenBank Identifier /GB=AF044576.1 /PROTEIN_GB=AAC38963.1 /CHR=X /FEA=Mapped Transcript /DEF=phospholipase C PLC210
Cluster 6grp_total > 01      4grp_total > 11      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 29.7
(0.2)
A 		6.3
(-2.5)
A 		1.9
(-3)
A 		54.2
(3)
A 		52
B 19.7
(-0.3)
A 		32.9
(2.7)
A 		7.7
(-3)
A 		34.2
(3)
A 		27
C 1.7
(-2.9)
A 		9
(-2.3)
A 		0.7
(-3)
A 		68.2
(3)
A 		68
avr 17
(-1.3) 		16.1
(-1.4) 		3.4
(-3) 		52.2
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 17.5
(0.3)
A 		8.9
(-1.8)
A 		28.2
(3)
A 		4.3
(-3)
A 		15.1
(-0.3)
A 		17.3
(0.3)
A 		24
B 10.7
(-1)
A 		26.1
(3)
A 		13.9
(-0.2)
A 		24.6
(2.6)
A 		11.4
(-0.9)
A 		3.2
(-3)
A 		23
C 14
(-1)
A 		40
(3)
M 		1.4
(-3)
A 		4.9
(-2.5)
A 		12.2
(-1.3)
A 		1.9
(-2.9)
A 		39
avr 14.1
(-0.7) 		25
(3) 		14.5
(-0.6) 		11.3
(-1.7) 		12.9
(-1.1) 		7.5
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.8
(3)
A 		1.4
(-2.5)
A 		0.5
(-3)
A 		7.9
(1.3)
A 		10
B 6.3
(1.3)
A 		8.1
(3)
A 		1.8
(-3)
A 		7.3
(2.2)
A 		6
C 0.6
(-2.8)
A 		2.6
(-1.7)
A 		0.2
(-3)
A 		11.5
(3)
A 		11
avr 5.9
(0.8) 		4
(-0.6) 		0.8
(-3) 		8.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.2
(-0.5)
A 		3.2
(-0.5)
A 		6.1
(3)
A 		1.1
(-3)
A 		4.6
(1.2)
A 		4.2
(0.7)
A 		5
B 3.7
(-1)
A 		8.7
(3)
A 		3.4
(-1.2)
A 		6.5
(1.2)
A 		4.6
(-0.3)
A 		1.2
(-3)
A 		8
C 5.2
(-0.5)
A 		12.2
(3)
M 		0.3
(-3)
A 		1
(-2.6)
A 		4
(-1.1)
A 		0.6
(-2.8)
A 		12
avr 4
(-1) 		8
(3) 		3.3
(-1.7) 		2.9
(-2.1) 		4.4
(-0.6) 		2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19979
Sequence Type Exemplar sequence
Representative Public ID 2957269 NCBI
Target Description g2957269 /REP_DB=GenBank Identifier /GB=AF044576.1 /PROTEIN_GB=AAC38963.1 /CHR=X /FEA=Mapped Transcript /DEF=phospholipase C PLC210
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029446 NCBI Caenorhabditis elegans PhosphoLipase C family member (plc-1) (plc-1) mRNA, complete cds. 11/11 None
F31B12.1a ENSEMBL cdna:known chromosome:CEL140:X:10795670:10812495:-1 gene:F31B12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181274 3 1 NM_001029446 175735_at (11)
NM_077404 173954_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10795669-10812497(-) 100.0 100.0
Public Domain and Genome References
Ensembl F31B12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60298 Hypothetical protein F31B12.1a [Caenorhabditis elegans] emb|CAB60281.3| Hypothetical protein F31B12.1a [Caenorhabditis elegans] ref|NP_001024617.1| PhosphoLipase C family member (plc-1) [Caenorhabditis elegans] gb|AAC38963.1| phospholipase C PLC210 [Caenorhabditis elegans] 0.0
blast CAD44153 Hypothetical protein F31B12.1c [Caenorhabditis elegans] emb|CAD44124.1| Hypothetical protein F31B12.1c [Caenorhabditis elegans] ref|NP_001024619.1| PhosphoLipase C family member (plc-1) [Caenorhabditis elegans] 0.0
blast CAB60299 Hypothetical protein F31B12.1b [Caenorhabditis elegans] emb|CAB60282.4| Hypothetical protein F31B12.1b [Caenorhabditis elegans] ref|NP_509805.3| PhosphoLipase C family member (plc-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000159 EMBL-EBI RA domain 1.0E-19
Pfam IPR000159 EMBL-EBI RA domain 9.6E-20
Pfam IPR000909 EMBL-EBI Phosphatidylinositol-specific phospholipase C, X domain 2.5E-68
Pfam IPR001711 EMBL-EBI Phosphatidylinositol-specific phospholipase C, Y domain 9.0E-35
Pfam IPR000008 EMBL-EBI C2 domain 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:175735_AT
gagaggatatttgaagttactgggattaattatgttttcactatatatttggttttgtag
ctgtggttggcaacttcttaaatttacggtttctttgtttgtatgaatagtctgtttttc
tttctttgtttaaattggattttttccatccttgttcacacagtatgcaaatggtgatgt
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGGATATTTGAAGTTACTGGGA 571 395 5736 Antisense
ACTGGGATTAATTATGTTTTCACTA 269 97 5754 Antisense
ATATATTTGGTTTTGTAGCTGTGGT 694 17 5778 Antisense
TTTGTAGCTGTGGTTGGCAACTTCT 504 665 5789 Antisense
TGGTTGGCAACTTCTTAAATTTACG 544 549 5799 Antisense
TACGGTTTCTTTGTTTGTATGAATA 527 647 5820 Antisense
GAATAGTCTGTTTTTCTTTCTTTGT 664 325 5840 Antisense
TTGGATTTTTTCCATCCTTGTTCAC 373 705 5870 Antisense
TTTTTCCATCCTTGTTCACACAGTA 423 675 5876 Antisense
CCATCCTTGTTCACACAGTATGCAA 369 271 5881 Antisense
CACACAGTATGCAAATGGTGATGTA 17 195 5892 Antisense
Sequence Source GenBank