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[175734_s_at]

Description g9966516 /REP_DB=GenBank Identifier /GB=AF298180.1 /PROTEIN_GB=AAG10302.1 /CHR=1 /FEA=Mapped Transcript /DEF=tropomyosin isoform IV
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 91      4grp_highest_8_8 > 07      4grp_high_8_8 > 20      6grp_highest_nonorm > 71      6grp_total > 93      4grp_total > 19      6grp_cgc > 99      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 265.2
(0.7)
P 		265.5
(0.7)
P 		219.1
(-3)
P 		293.4
(3)
P 		74
B 238.2
(-3)
P 		290.1
(0.5)
P 		301.7
(1.2)
P 		328.1
(3)
P 		90
C 304.7
(-0.2)
P 		304.9
(-0.2)
P 		237.1
(-3)
P 		383.5
(3)
P 		146
avr 269.4
(-1.8) 		286.8
(-0.5) 		252.6
(-3) 		335
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 243.2
(-2.5)
P 		370.5
(1.4)
P 		282.1
(-1.3)
P 		228.4
(-3)
P 		423
(3)
P 		260.7
(-2)
P 		195
B 345.4
(-0.4)
P 		346.7
(-0.3)
P 		340.1
(-0.5)
P 		220.1
(-3)
P 		504.9
(3)
P 		270.9
(-1.9)
P 		285
C 466.9
(1.3)
P 		301.5
(-1.8)
P 		242.7
(-2.8)
P 		234.8
(-3)
P 		559.7
(3)
P 		233.8
(-3)
P 		326
avr 351.8
(-0.2) 		339.6
(-0.5) 		288.3
(-1.6) 		227.8
(-3) 		495.9
(3) 		255.1
(-2.4) 		268
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 96.6
(3)
P 		57.6
(-1.4)
P 		57.3
(-1.4)
P 		42.9
(-3)
P 		54
B 76
(3)
P 		71.6
(-1.3)
P 		69.9
(-3)
P 		69.9
(-3)
P 		6
C 100.9
(3)
P 		87.6
(0.8)
P 		82.6
(-0)
P 		64.7
(-3)
P 		36
avr 91.2
(3) 		72.3
(-0.5) 		69.9
(-1) 		59.2
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 44.8
(-3)
P 		131.8
(3)
P 		61.4
(-1.9)
P 		57.9
(-2.1)
P 		127.7
(2.7)
P 		63.5
(-1.7)
P 		87
B 120.2
(-0.5)
P 		115.4
(-0.7)
P 		82.6
(-2)
P 		58.3
(-3)
P 		205.1
(3)
P 		101
(-1.3)
P 		147
C 173.1
(2.6)
P 		92
(-1)
P 		61.8
(-2.3)
P 		47.2
(-3)
P 		181.1
(3)
P 		78.3
(-1.6)
P 		134
avr 112.7
(-0) 		113.1
(0) 		68.6
(-2.3) 		54.5
(-3) 		171.3
(3) 		80.9
(-1.6) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175734_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19693
Sequence Type Exemplar sequence
Representative Public ID 9966516 NCBI
Target Description g9966516 /REP_DB=GenBank Identifier /GB=AF298180.1 /PROTEIN_GB=AAG10302.1 /CHR=1 /FEA=Mapped Transcript /DEF=tropomyosin isoform IV
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026528(11), NM_001026526(11), NM_001026525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026528 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
NM_001026526 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
NM_001026525 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
Y105E8B.1e.1 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633555:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1c ENSEMBL cdna:known chromosome:CEL140:I:14629281:14633553:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:14629292:14639190:-1 gene:Y105E8B.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026527 5/11 Cross Hyb Matching Probes None
SNAP00000011730 5/11 Cross Hyb Matching Probes None
Y105E8B.1b.3 5/11 Cross Hyb Matching Probes B 
Y105E8B.1b.1 5/11 Cross Hyb Matching Probes None
Y105E8B.1b.4 5/11 Cross Hyb Matching Probes None
Y105E8B.1d 5/11 Cross Hyb Matching Probes B 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173319 6 3 NM_001026524 172001_x_at (11), 194257_x_at (11)
NM_001026525 172001_x_at (11), 175734_s_at (11), 194257_x_at (11)
NM_001026526 172001_x_at (11), 175734_s_at (11), 194257_x_at (11)
NM_001026528 171997_x_at (11), 172001_x_at (11), 175734_s_at (11), 176396_s_at (11), 194257_x_at (11)
NM_001026529 172001_x_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14629222-14633483(-) 98.26 100.0
Public Domain and Genome References
Ensembl Y105E8B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70115 Hypothetical protein Y105E8B.1c [Caenorhabditis elegans] ref|NP_001021697.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] gb|AAG10302.1| tropomyosin isoform IV [Caenorhabditis elegans] 4.0E-98
blast CAC70113 Hypothetical protein Y105E8B.1b [Caenorhabditis elegans] ref|NP_001021696.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] 1.0E-80
blast CAC70112 Hypothetical protein Y105E8B.1d [Caenorhabditis elegans] ref|NP_001021698.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] dbj|BAA07541.1| CeTMII [Caenorhabditis elegans] dbj|BAA07544.1| CeTMII [Caenorhabditis elegans] 1.0E-80
blast CAD45604 Hypothetical protein Y105E8B.1e [Caenorhabditis elegans] ref|NP_001021699.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] dbj|BAA07542.1| CeTMIII [Caenorhabditis elegans] sp|Q27249|TPM3_CAEEL Tropomyosin isoform 3 dbj|BAA07545.1| CeTMIII [Caenorhabditis elegans] 6.0E-78
blast CAE72603 Hypothetical protein CBG19793 [Caenorhabditis briggsae] 2.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR000533 EMBL-EBI Tropomyosin 1.6E-121
Pfam IPR000533 EMBL-EBI Tropomyosin 3.6E-100
Pfam IPR000533 EMBL-EBI Tropomyosin 2.0E-109
Sequence
Target Sequence 
>C. ELEGANS:175734_S_AT
tccgtgacgcggaagtccttaaagcacgccaattacaagatgagcttgaccatatggttc
aagagctcaattcagtttgagaatgtgtcctaacatcttcttcttcttcttcttcttcga
ctgatgtgtttgtgtataaatttcattaaatgtttcctaattcacttgctgtgtgagatg
atgatattctaatcaaatgttatatacgaattggtgcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGTGACGCGGAAGTCCTTAAAGC 347 595 704 Antisense
GAAGTCCTTAAAGCACGCCAATTAC 700 335 715 Antisense
GCACGCCAATTACAAGATGAGCTTG 49 315 727 Antisense
AAGATGAGCTTGACCATATGGTTCA 159 155 740 Antisense
ATGGTTCAAGAGCTCAATTCAGTTT 441 49 757 Antisense
GAATGTGTCCTAACATCTTCTTCTT 364 331 784 Antisense
CTTCTTCTTCTTCGACTGATGTGTT 483 221 809 Antisense
TTCTTCGACTGATGTGTTTGTGTAT 266 689 816 Antisense
ATGTTTCCTAATTCACTTGCTGTGT 579 47 853 Antisense
CTTGCTGTGTGAGATGATGATATTC 183 219 868 Antisense
AATGTTATATACGAATTGGTGCACG 666 161 899 Antisense
Sequence Source GenBank