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[175733_at]

Description g7682762 /REP_DB=GenBank Identifier /GB=AF252605.1 /PROTEIN_GB=AAF67351.1 /CHR=X /FEA=Mapped Transcript /DEF=Gas3-PMP22-like protein
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 14      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 70      6grp_total > 04      4grp_total > 62      6grp_highest_sub > De      6grp_cgc > 32      6grp_cgc_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 474.6
(3)
P 		196.7
(-1.4)
P 		290.8
(0.1)
P 		92.3
(-3)
P 		382
B 338
(3)
P 		256.4
(0.8)
P 		187.1
(-1)
P 		112.2
(-3)
P 		226
C 420
(3)
P 		297.3
(0.6)
P 		378.5
(2.2)
P 		108
(-3)
P 		312
avr 410.9
(3) 		250.1
(-0.1) 		285.5
(0.5) 		104.2
(-3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 243.2
(1.1)
P 		291.9
(2.8)
P 		297.7
(3)
P 		282
(2.5)
P 		245.8
(1.2)
P 		122.8
(-3)
P 		175
B 465
(3)
P 		337.7
(0.5)
P 		161.4
(-3)
P 		272.7
(-0.8)
P 		212.4
(-2)
P 		187.9
(-2.5)
P 		304
C 391.6
(2.2)
P 		434.9
(3)
P 		305.1
(0.6)
P 		142.5
(-2.3)
P 		186.3
(-1.5)
P 		105.7
(-3)
P 		329
avr 366.6
(3) 		354.8
(2.7) 		254.7
(0.1) 		232.4
(-0.5) 		214.8
(-1) 		138.8
(-3) 		228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 172.8
(3)
P 		42.7
(-1.9)
P 		76
(-0.6)
P 		13.5
(-3)
P 		159
B 107.8
(3)
P 		63.3
(-0.2)
P 		43.4
(-1.6)
P 		23.9
(-3)
P 		84
C 139
(3)
P 		85.5
(0.3)
P 		131.9
(2.6)
P 		18.2
(-3)
P 		121
avr 139.9
(3) 		63.8
(-0.8) 		83.8
(0.2) 		18.5
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 44.8
(-1.8)
P 		103.8
(3)
P 		64.8
(-0.2)
P 		71.5
(0.4)
P 		74.2
(0.6)
P 		29.9
(-3)
P 		74
B 161.8
(3)
P 		112.4
(0.6)
P 		39.2
(-3)
P 		72.2
(-1.4)
P 		86.3
(-0.7)
P 		70.1
(-1.5)
P 		123
C 145.1
(3)
P 		132.7
(2.4)
P 		77.6
(-0.5)
P 		28.7
(-3)
P 		60.3
(-1.4)
P 		35.4
(-2.7)
P 		116
avr 117.2
(3) 		116.3
(2.9) 		60.5
(-1.7) 		57.5
(-2) 		73.6
(-0.6) 		45.1
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175733_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19974
Sequence Type Exemplar sequence
Representative Public ID 7682762 NCBI
Target Description g7682762 /REP_DB=GenBank Identifier /GB=AF252605.1 /PROTEIN_GB=AAF67351.1 /CHR=X /FEA=Mapped Transcript /DEF=Gas3-PMP22-like protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076857 NCBI Caenorhabditis elegans CLaudin-like in Caenorhabditis family member (clc-5) (clc-5) mRNA, complete cds. 11/11 A 
C01C10.4 ENSEMBL cdna:known chromosome:CEL140:X:7433588:7435677:1 gene:C01C10.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7433586-7435676(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clc-5
Ensembl C01C10.4
Entrez Gene 181000 Entrez gene
SwissProt Q9NGJ7 EMBL-EBI
WormBase CE28882 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK95867 Claudin-like in caenorhabditis protein 5 [Caenorhabditis elegans] ref|NP_509258.1| CLaudin-like in Caenorhabditis family member (clc-5) [Caenorhabditis elegans] gb|AAF67351.1| Gas3/PMP22-like protein [Caenorhabditis elegans] sp|Q9NGJ7|CLC5_CAEEL Clc-like protein 1.0E-161
blast T15364 hypothetical protein C01C10.1 - Caenorhabditis elegans 1.0E-154
blast CAE70213 Hypothetical protein CBG16691 [Caenorhabditis briggsae] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR010761 EMBL-EBI Clc-like 2.6E-111
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509258.1 4 13-35,102-124,137-159,182-204
C01C10.4 4 13-35,102-124,137-159,182-204
Sequence
Target Sequence 
>C. ELEGANS:175733_AT
gaatctctaaatgtttctaattccattgttctctttgtttttactcagttgtaacttctt
gtttcacttcccgcaaatttgatggcatgcttcacagaatatatatataacgagtcttta
ttttcaattagattcaattgtggcttttgtacaatatcaaatagtttccatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTCTAAATGTTTCTAATTCCA 672 325 910 Antisense
GTTTCTAATTCCATTGTTCTCTTTG 54 451 922 Antisense
GTTCTCTTTGTTTTTACTCAGTTGT 394 443 937 Antisense
CTCAGTTGTAACTTCTTGTTTCACT 685 227 953 Antisense
TTGTTTCACTTCCCGCAAATTTGAT 332 705 968 Antisense
CACTTCCCGCAAATTTGATGGCATG 288 197 974 Antisense
AATTTGATGGCATGCTTCACAGAAT 24 175 985 Antisense
GATGGCATGCTTCACAGAATATATA 308 407 990 Antisense
AACGAGTCTTTATTTTCAATTAGAT 391 143 1018 Antisense
TAGATTCAATTGTGGCTTTTGTACA 188 651 1038 Antisense
GTACAATATCAAATAGTTTCCATTA 369 461 1058 Antisense
Sequence Source GenBank