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[175732_at]

Description g5734141 /REP_DB=GenBank Identifier /GB=AF166167.1 /PROTEIN_GB=AAD49856.1 /CHR=X /FEA=Mapped Transcript /DEF=adducin-related protein
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 33      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 70      6grp_total > 21      4grp_total > 54      6grp_highest_sub > 02_03      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 278.5
(3)
P 		190.6
(-1.7)
P 		213.1
(-0.5)
P 		166.4
(-3)
P 		112
B 185.2
(1)
P 		210.1
(3)
P 		184.3
(0.9)
P 		137.2
(-3)
P 		73
C 309.1
(3)
P 		200.8
(-2.7)
P 		209.5
(-2.3)
P 		195.6
(-3)
P 		114
avr 257.6
(3) 		200.5
(-0.8) 		202.3
(-0.6) 		166.4
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 272.6
(0.6)
P 		358
(3)
P 		281
(0.9)
P 		182.9
(-1.9)
P 		199.1
(-1.4)
P 		141.5
(-3)
P 		217
B 237.7
(-1.3)
P 		302.7
(2.8)
P 		306.4
(3)
P 		282.9
(1.5)
P 		255.6
(-0.2)
P 		210.7
(-3)
P 		96
C 273.2
(-1.1)
P 		450.9
(3)
P 		364.9
(1)
P 		305.6
(-0.4)
P 		191.8
(-3)
P 		206.1
(-2.7)
P 		259
avr 261.2
(-0.6) 		370.5
(3) 		317.4
(1.3) 		257.1
(-0.7) 		215.5
(-2) 		186.1
(-3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 101.4
(3)
P 		41.4
(-1.7)
P 		55.7
(-0.6)
P 		24.4
(-3)
P 		77
B 59.1
(3)
P 		51.9
(1.6)
P 		42.7
(-0.3)
P 		29.2
(-3)
P 		30
C 102.3
(3)
P 		57.7
(-0.9)
P 		73
(0.5)
P 		33
(-3)
P 		69
avr 87.6
(3) 		50.3
(-0.8) 		57.1
(-0.1) 		28.9
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 50.3
(-2)
P 		127.3
(3)
P 		61.2
(-1.3)
P 		46.4
(-2.2)
P 		60.1
(-1.3)
P 		34.5
(-3)
P 		93
B 82.7
(-1.3)
P 		100.8
(2.4)
P 		74.4
(-3)
P 		74.9
(-2.9)
P 		103.9
(3)
P 		78.6
(-2.1)
P 		30
C 101.3
(0.1)
P 		137.6
(3)
P 		92.9
(-0.5)
P 		61.5
(-3)
P 		62.1
(-3)
P 		69
(-2.4)
P 		76
avr 78.1
(-1.3) 		121.9
(3) 		76.2
(-1.5) 		60.9
(-3) 		75.4
(-1.6) 		60.7
(-3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19955
Sequence Type Exemplar sequence
Representative Public ID 5734141 NCBI
Target Description g5734141 /REP_DB=GenBank Identifier /GB=AF166167.1 /PROTEIN_GB=AAD49856.1 /CHR=X /FEA=Mapped Transcript /DEF=adducin-related protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029469(11), NM_001029472(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029469 NCBI Caenorhabditis elegans ADDucin family member (add-1) (add-1) mRNA, complete cds. 11/11 None
NM_001029472 NCBI Caenorhabditis elegans ADDucin family member (add-1) (add-1) mRNA, complete cds. 11/11 None
F39C12.2b ENSEMBL cdna:known chromosome:CEL140:X:4854045:4860004:-1 gene:F39C12.2 11/11 A 
F39C12.2e ENSEMBL cdna:known chromosome:CEL140:X:4854051:4860010:-1 gene:F39C12.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029470 6/11 Cross Hyb Matching Probes None
NM_001029471 2/11 Cross Hyb Matching Probes None
F39C12.2c 6/11 Cross Hyb Matching Probes A 
F39C12.2d 2/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180760 5 2 NM_001029468 175727_s_at (11)
NM_001029469 175727_s_at (11), 175732_at (11)
NM_001029470 175727_s_at (11)
NM_001029472 175727_s_at (11), 175732_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4854045-4860005(-) 99.72 100.0
Public Domain and Genome References
Ensembl F39C12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70639 Adducin protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024640.1| ADDucin family member (add-1) [Caenorhabditis elegans] sp|Q9U9K0|ADD1_CAEEL Adducin-related protein 0.0
blast AAD49856 adducin-related protein [Caenorhabditis elegans] 0.0
blast AAP82653 Adducin protein 1, isoform e [Caenorhabditis elegans] ref|NP_001024643.1| ADDucin family member (add-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001303 EMBL-EBI Class II aldolase/adducin, N-terminal 5.8E-68
Sequence
Target Sequence 
>C. ELEGANS:175732_AT
gttgtgttcgattgcgatcacccttctccgatgtcaatttcgacagagtaccctgaaaaa
gttaaaatgacgcgattttcgtcgactcaaggaacaagtgaaggcaatacaacgtctcga
tcgtgcactacagcgtctgaagaagaaaagcctacaaaagatgagaaaaagaagaaaaag
aaaggatttttgtcatttatgcgaaaaaaggacaaatgaaaaatgagagttttgctctca
ccttgctctcaccaacacgttcacatcacttaactctaacacttttcgataactttttct
atgttttcttttcaattttcagatccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTGTTCGATTGCGATCACCCTT 259 437 1993 Antisense
ACCCTTCTCCGATGTCAATTTCGAC 164 67 2012 Antisense
GTCAATTTCGACAGAGTACCCTGAA 316 463 2025 Antisense
ATGACGCGATTTTCGTCGACTCAAG 377 45 2059 Antisense
GGCAATACAACGTCTCGATCGTGCA 546 533 2095 Antisense
TCGATCGTGCACTACAGCGTCTGAA 432 601 2109 Antisense
TGAGAGTTTTGCTCTCACCTTGCTC 250 569 2216 Antisense
TCACCAACACGTTCACATCACTTAA 503 625 2241 Antisense
ATCACTTAACTCTAACACTTTTCGA 78 29 2257 Antisense
CACTTTTCGATAACTTTTTCTATGT 416 197 2272 Antisense
TTTCTTTTCAATTTTCAGATCCGGA 609 671 2297 Antisense
Sequence Source GenBank