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[175731_s_at]

Description g7682760 /REP_DB=GenBank Identifier /GB=AF252604.1 /PROTEIN_GB=AAF67350.1 /CHR=X /FEA=Mapped Transcript /DEF=Gas3-PMP22-like protein
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      4grp_high_8_8 > 43      6grp_highest_nonorm > 71      6grp_total > 32      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 409
1 2 3 4 range
A 401.1
(3)
P 		363.9
(2)
P 		303.7
(0.4)
P 		175.1
(-3)
A 		226
B 268.4
(-0.6)
P 		515
(3)
P 		392.3
(1.2)
P 		106.2
(-3)
A 		409
C 440.4
(3)
P 		382.1
(1.6)
P 		325.5
(0.2)
P 		189.9
(-3)
P 		251
avr 370
(1.9) 		420.3
(3) 		340.5
(1.2) 		157.1
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 330.9
(1.6)
P 		324.4
(1.5)
P 		387.6
(3)
P 		323.9
(1.4)
P 		247.9
(-0.4)
P 		141.8
(-3)
P 		246
B 371.2
(2)
P 		360.8
(1.7)
P 		414.6
(3)
P 		398.1
(2.6)
P 		259
(-0.6)
P 		158
(-3)
P 		257
C 422.8
(3)
P 		373.4
(1.8)
P 		363.6
(1.5)
P 		333.2
(0.8)
P 		218
(-2.1)
P 		181.5
(-3)
P 		241
avr 375
(2.6) 		352.9
(2.1) 		388.6
(3) 		351.7
(2) 		241.6
(-0.9) 		160.4
(-3) 		228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 146
(3)
P 		79
(-0.3)
P 		79.4
(-0.3)
P 		25.6
(-3)
A 		120
B 85.6
(0.6)
P 		127.2
(3)
P 		90.9
(0.9)
P 		22.6
(-3)
A 		105
C 145.8
(3)
P 		109.8
(1.1)
P 		113.4
(1.3)
P 		32
(-3)
P 		114
avr 125.8
(3) 		105.3
(1.8) 		94.6
(1.1) 		26.7
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 61
(-1)
P 		115.4
(3)
P 		84.4
(0.7)
P 		82.1
(0.5)
P 		74.8
(-0)
P 		34.5
(-3)
P 		81
B 129.2
(3)
P 		120.1
(2.2)
P 		100.7
(0.6)
P 		105.4
(1)
P 		105.2
(1)
P 		58.9
(-3)
P 		70
C 156.7
(3)
P 		113.9
(0.3)
P 		92.6
(-1)
P 		67
(-2.6)
P 		70.5
(-2.4)
P 		60.7
(-3)
P 		96
avr 115.6
(2.9) 		116.5
(3) 		92.6
(0.8) 		84.8
(0.1) 		83.5
(-0) 		51.4
(-3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175731_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19997
Sequence Type Exemplar sequence
Representative Public ID 7682760 NCBI
Target Description g7682760 /REP_DB=GenBank Identifier /GB=AF252604.1 /PROTEIN_GB=AAF67350.1 /CHR=X /FEA=Mapped Transcript /DEF=Gas3-PMP22-like protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076856(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076856 NCBI Caenorhabditis elegans CLaudin-like in Caenorhabditis family member (clc-2) (clc-2) mRNA, complete cds. 11/11 A 
SNAP00000044568 ENSEMBL cdna:SNAP chromosome:CEL140:X:7431420:7435399:1 11/11 None
GENEFINDER00000044574 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7431420:7433286:1 11/11 None
C01C10.1 ENSEMBL cdna:known chromosome:CEL140:X:7431416:7433481:1 gene:C01C10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7431414-7433480(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clc-2
Ensembl C01C10.1
Entrez Gene 180999 Entrez gene
SwissProt Q11085 EMBL-EBI
WormBase CE28881 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5923 tight junction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T15364 hypothetical protein C01C10.1 - Caenorhabditis elegans 0.0
blast AAK95867 Claudin-like in caenorhabditis protein 5 [Caenorhabditis elegans] ref|NP_509258.1| CLaudin-like in Caenorhabditis family member (clc-5) [Caenorhabditis elegans] gb|AAF67351.1| Gas3/PMP22-like protein [Caenorhabditis elegans] sp|Q9NGJ7|CLC5_CAEEL Clc-like protein 1.0E-140
blast AAK95866 Claudin-like in caenorhabditis protein 2 [Caenorhabditis elegans] ref|NP_509257.1| CLaudin-like in Caenorhabditis family member (clc-2) [Caenorhabditis elegans] gb|AAF67350.1| Gas3/PMP22-like protein [Caenorhabditis elegans] sp|Q11085|CLC2_CAEEL Clc-like protein 1.0E-132
blast T15364 hypothetical protein C01C10.1 - Caenorhabditis elegans 1.0E-131
blast AAK95866 Claudin-like in caenorhabditis protein 2 [Caenorhabditis elegans] ref|NP_509257.1| CLaudin-like in Caenorhabditis family member (clc-2) [Caenorhabditis elegans] gb|AAF67350.1| Gas3/PMP22-like protein [Caenorhabditis elegans] sp|Q11085|CLC2_CAEEL Clc-like protein 1.0E-131
blast CAE70212 Hypothetical protein CBG16690 [Caenorhabditis briggsae] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR010761 EMBL-EBI Clc-like 4.1E-106
Pfam IPR010761 EMBL-EBI Clc-like 1.2E-91
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509257.1 4 7-29,91-113,126-148,172-194
C01C10.1 4 7-29,91-113,126-148,172-194
SNAP00000044568 7 7-29,91-113,126-148,172-194,316-338,353-375,396-418
GENEFINDER00000044574 4 7-29,91-113,126-148,172-194
Sequence
Target Sequence 
>C. ELEGANS:175731_S_AT
tattttgagatctgttttccttgttttggcagcggtaattgctttcggatgtcttattgc
atttgctgtctactcatatatggtggagtatcgctttttccacgtgtccgttagtggaat
ttatgagaaacatcgaggatattcgtggtacatcgctcttactggtgcatttgtttattt
ggtagcaatcattttatcagtagtccatgtactattgcaagccagaaatagcaacacaac
aatgtcaagacagaatatcaactcttctttgcaaagtgatttctttgagtaccaatacca
cccaaatcgttccatggaatcgtttgaagatcgttttgctatgaggacacttccgccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTGAGATCTGTTTTCCTTGTT 544 661 382 Antisense
TTTTCCTTGTTTTGGCAGCGGTAAT 625 673 396 Antisense
GCGGTAATTGCTTTCGGATGTCTTA 123 293 413 Antisense
ATTGCATTTGCTGTCTACTCATATA 201 7 437 Antisense
GGTGGAGTATCGCTTTTTCCACGTG 308 499 463 Antisense
GCTTTTTCCACGTGTCCGTTAGTGG 368 303 474 Antisense
TACATCGCTCTTACTGGTGCATTTG 106 645 530 Antisense
AGCAATCATTTTATCAGTAGTCCAT 405 75 565 Antisense
AGTCCATGTACTATTGCAAGCCAGA 338 61 583 Antisense
TTGAGTACCAATACCACCCAAATCG 108 681 666 Antisense
TTTGCTATGAGGACACTTCCGCCAG 709 667 716 Antisense
Sequence Source GenBank