[Home] | [Total List]

[175730_at]

Description g7682760 /REP_DB=GenBank Identifier /GB=AF252604.1 /PROTEIN_GB=AAF67350.1 /CHR=X /FEA=Mapped Transcript /DEF=Gas3-PMP22-like protein
Cluster 6grp_high1_10_10 > 17      4grp_high_8_8 > 49      6grp_total > 06      4grp_total > 62      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 142.4
(3)
P 		109.6
(-0.1)
P 		118.4
(0.7)
P 		78.9
(-3)
P 		64
B 183.2
(3)
P 		99.2
(-1.2)
M 		109.8
(-0.7)
P 		64.3
(-3)
P 		119
C 119.9
(0.1)
P 		120.5
(0.2)
P 		143.3
(3)
P 		95
(-3)
P 		48
avr 148.5
(3) 		109.8
(-0.4) 		123.8
(0.9) 		79.4
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 156.7
(1.6)
P 		89.2
(-2.4)
P 		180.4
(3)
P 		79.9
(-3)
P 		105.7
(-1.5)
P 		106
(-1.4)
P 		101
B 166.4
(3)
P 		159.7
(2.7)
P 		48.9
(-3)
P 		54.9
(-2.7)
P 		123.1
(0.8)
P 		71.6
(-1.8)
P 		118
C 210.7
(3)
P 		163.6
(1.3)
P 		62.2
(-2.3)
P 		89.5
(-1.3)
M 		63
(-2.3)
P 		42.4
(-3)
M 		168
avr 177.9
(3) 		137.5
(0.7) 		97.2
(-1.6) 		74.8
(-2.9) 		97.3
(-1.6) 		73.3
(-3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 51.8
(3)
P 		23.8
(-1.2)
P 		31
(-0.1)
P 		11.5
(-3)
P 		40
B 58.4
(3)
P 		24.5
(-1.6)
M 		25.4
(-1.4)
P 		13.7
(-3)
P 		45
C 39.7
(1.2)
P 		34.6
(0.3)
P 		50
(3)
P 		16
(-3)
P 		34
avr 50
(3) 		27.6
(-0.7) 		35.5
(0.6) 		13.7
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 28.9
(-0.3)
P 		31.7
(0.6)
P 		39.3
(3)
P 		20.3
(-3)
P 		31.9
(0.7)
P 		25.8
(-1.3)
P 		19
B 57.9
(3)
P 		53.2
(2.4)
P 		11.9
(-3)
P 		14.5
(-2.7)
P 		50
(2)
P 		26.7
(-1.1)
P 		46
C 78.1
(3)
P 		49.9
(0.4)
P 		15.8
(-2.8)
P 		18
(-2.6)
M 		20.4
(-2.4)
P 		14.2
(-3)
M 		64
avr 55
(3) 		44.9
(1.4) 		22.3
(-2.2) 		17.6
(-3) 		34.1
(-0.4) 		22.2
(-2.3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19997
Sequence Type Exemplar sequence
Representative Public ID 7682760 NCBI
Target Description g7682760 /REP_DB=GenBank Identifier /GB=AF252604.1 /PROTEIN_GB=AAF67350.1 /CHR=X /FEA=Mapped Transcript /DEF=Gas3-PMP22-like protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076856(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076856 NCBI Caenorhabditis elegans CLaudin-like in Caenorhabditis family member (clc-2) (clc-2) mRNA, complete cds. 11/11 A 
C01C10.1 ENSEMBL cdna:known chromosome:CEL140:X:7431416:7433481:1 gene:C01C10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7431414-7433480(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clc-2
Ensembl C01C10.1
Entrez Gene 180999 Entrez gene
SwissProt Q11085 EMBL-EBI
WormBase CE28881 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5923 tight junction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK95866 Claudin-like in caenorhabditis protein 2 [Caenorhabditis elegans] ref|NP_509257.1| CLaudin-like in Caenorhabditis family member (clc-2) [Caenorhabditis elegans] gb|AAF67350.1| Gas3/PMP22-like protein [Caenorhabditis elegans] sp|Q11085|CLC2_CAEEL Clc-like protein 1.0E-132
blast T15364 hypothetical protein C01C10.1 - Caenorhabditis elegans 1.0E-131
blast CAE70212 Hypothetical protein CBG16690 [Caenorhabditis briggsae] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR010761 EMBL-EBI Clc-like 4.1E-106
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509257.1 4 7-29,91-113,126-148,172-194
C01C10.1 4 7-29,91-113,126-148,172-194
Sequence
Target Sequence 
>C. ELEGANS:175730_AT
acgacagtgttttaattgaagaatctttcacatttttgtcatatcattcaatcggtattc
actttttctttaatatttcactgaatgacgggtctcttgattttcatcatatttttcttt
caatcatgtactacggactgctgacaaacaaactttcattccgataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACAGTGTTTTAATTGAAGAATC 520 89 761 Antisense
GAAGAATCTTTCACATTTTTGTCAT 112 341 778 Antisense
TTCACATTTTTGTCATATCATTCAA 140 687 787 Antisense
TATCATTCAATCGGTATTCACTTTT 365 659 802 Antisense
TTCACTTTTTCTTTAATATTTCACT 255 687 818 Antisense
TATTTCACTGAATGACGGGTCTCTT 230 661 834 Antisense
TGACGGGTCTCTTGATTTTCATCAT 287 571 846 Antisense
GGGTCTCTTGATTTTCATCATATTT 515 497 850 Antisense
TTTTTCTTTCAATCATGTACTACGG 315 675 872 Antisense
GTACTACGGACTGCTGACAAACAAA 432 459 888 Antisense
GACAAACAAACTTTCATTCCGATAA 57 365 903 Antisense
Sequence Source GenBank