[Home] | [Total List]

[175729_at]

Description g5734151 /REP_DB=GenBank Identifier /GB=AF166274.1 /PROTEIN_GB=AAD49861.1 /CHR=4 /FEA=Mapped Transcript /DEF=dynamin-related protein
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 84      6grp_total > 47      4grp_total > 63      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 733.5
(3)
P 		560.3
(-0.8)
P 		642
(1)
P 		456.7
(-3)
P 		277
B 823.2
(3)
P 		650.3
(-1.4)
P 		584.9
(-3)
P 		617.5
(-2.2)
P 		238
C 728.9
(3)
P 		537.8
(-2.7)
P 		709.4
(2.4)
P 		528.2
(-3)
P 		201
avr 761.9
(3) 		582.8
(-1.7) 		645.4
(-0.1) 		534.1
(-3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 391
1 2 3 4 5 6 range
A 696.4
(0.7)
P 		646.2
(-0.2)
P 		526.6
(-2.3)
P 		488.6
(-3)
P 		631.1
(-0.5)
P 		827.8
(3)
P 		339
B 716.1
(1.2)
P 		714.1
(1.1)
P 		459.8
(-3)
P 		509.5
(-2.2)
P 		499.9
(-2.3)
P 		829.8
(3)
P 		370
C 782.4
(1.6)
P 		726
(0.5)
P 		612.6
(-1.8)
P 		554.7
(-3)
P 		554
(-3)
P 		850.4
(3)
P 		296
avr 731.6
(1) 		695.4
(0.4) 		533
(-2.7) 		517.6
(-3) 		561.7
(-2.2) 		836
(3) 		318
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 267.1
(3)
P 		121.6
(-1.4)
P 		167.8
(0)
P 		66.8
(-3)
P 		200
B 262.5
(3)
P 		160.6
(-1.7)
P 		135.5
(-2.8)
P 		131.6
(-3)
P 		131
C 241.3
(2.8)
P 		154.6
(-0.5)
P 		247.2
(3)
P 		89.1
(-3)
P 		158
avr 257
(3) 		145.6
(-1.1) 		183.5
(0.3) 		95.8
(-3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 128.4
(-2.3)
P 		229.8
(3)
P 		114.7
(-3)
P 		123.9
(-2.5)
P 		190.4
(0.9)
P 		201.6
(1.5)
P 		115
B 249.2
(1.2)
P 		237.7
(0.8)
P 		111.6
(-3)
P 		134.9
(-2.3)
P 		203.1
(-0.2)
P 		309.4
(3)
P 		198
C 290
(3)
P 		221.5
(0.7)
P 		155.9
(-1.5)
P 		111.5
(-3)
P 		179.3
(-0.7)
P 		284.7
(2.8)
P 		179
avr 222.5
(1.2) 		229.7
(1.5) 		127.4
(-2.8) 		123.4
(-3) 		190.9
(-0.1) 		265.2
(3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19892
Sequence Type Exemplar sequence
Representative Public ID 5734151 NCBI
Target Description g5734151 /REP_DB=GenBank Identifier /GB=AF166274.1 /PROTEIN_GB=AAD49861.1 /CHR=4 /FEA=Mapped Transcript /DEF=dynamin-related protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028204 NCBI Caenorhabditis elegans Dynamin Related Protein family member (drp-1) (drp-1) mRNA, complete cds. 11/11 None
T12E12.4a.1 ENSEMBL cdna:known chromosome:CEL140:IV:5538477:5541333:1 gene:T12E12.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171344 4/11 Cross Hyb Matching Probes A 
T12E12.4b 4/11 Cross Hyb Matching Probes A 
T12E12.4a.2 4/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177336 2 1 NM_001028204 175729_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5538480-5541339(+) 100.0 100.0
Public Domain and Genome References
Ensembl T12E12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL56621 Dynamin related protein protein 1, isoform a [Caenorhabditis elegans] ref|NP_001023375.1| Dynamin Related Protein family member (drp-1) [Caenorhabditis elegans] gb|AAD49861.1| dynamin-related protein [Caenorhabditis elegans] 0.0
blast AAL56622 Dynamin related protein protein 1, isoform b [Caenorhabditis elegans] ref|NP_741403.2| Dynamin Related Protein family member (drp-1) [Caenorhabditis elegans] 0.0
blast T29559 hypothetical protein T12E12.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003130 EMBL-EBI Dynamin GTPase effector 4.6E-30
Pfam IPR000375 EMBL-EBI Dynamin central region 6.9E-121
Pfam IPR001401 EMBL-EBI Dynamin 3.0E-107
Sequence
Target Sequence 
>C. ELEGANS:175729_AT
acacaagtttggtgatattcccatcaaataatttccagctgttttaactattgcaatgta
gattaggacgattctaattttattttcacgattgattcgatttattgtattttaactatt
tttcttcttctcttcgcctcgatgataattctagttcggtaactcccccgtttctgtatg
atctctatgctccgttccctttgatgttttcttttcatgataatattgtgtgctccttga
aagaatcacggtttgttgtagattctagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACAAGTTTGGTGATATTCCCATC 18 101 2118 Antisense
ATTCCCATCAAATAATTTCCAGCTG 422 9 2134 Antisense
TTTCCAGCTGTTTTAACTATTGCAA 653 669 2149 Antisense
GGACGATTCTAATTTTATTTTCACG 335 523 2183 Antisense
TTCTTCTCTTCGCCTCGATGATAAT 131 691 2242 Antisense
TGATAATTCTAGTTCGGTAACTCCC 694 563 2260 Antisense
CCCCGTTTCTGTATGATCTCTATGC 506 259 2283 Antisense
TTTCTGTATGATCTCTATGCTCCGT 694 669 2288 Antisense
TCATGATAATATTGTGTGCTCCTTG 201 623 2332 Antisense
GTGCTCCTTGAAAGAATCACGGTTT 426 477 2347 Antisense
TCACGGTTTGTTGTAGATTCTAGTT 186 625 2363 Antisense
Sequence Source GenBank