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[175728_s_at]

Description g5441307 /REP_DB=GenBank Identifier /GB=AF150958.1 /PROTEIN_GB=AAD43178.1 /CHR=X /FEA=Mapped Transcript /DEF=guidance protein MIG-13
Cluster 6grp_high1_10_10 > 64      6grp_total > 47      4grp_total > 01      6grp_cgc > 27      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 104.8
(-0.8)
A 		93.7
(-1.5)
A 		72
(-3)
A 		161.4
(3)
A 		89
B 46
(-3)
A 		79.9
(0.4)
A 		88.2
(1.2)
A 		105.7
(3)
M 		60
C 86.1
(-1.9)
A 		68.9
(-3)
A 		95.8
(-1.2)
A 		160.4
(3)
P 		92
avr 79
(-3) 		80.8
(-2.8) 		85.3
(-2.4) 		142.5
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 129.1
(1.8)
A 		125.4
(1.3)
P 		103.2
(-1.9)
A 		106.9
(-1.4)
A 		95.5
(-3)
P 		137.4
(3)
P 		42
B 108.2
(-2.4)
P 		139.6
(1.8)
P 		148.9
(3)
P 		124.4
(-0.3)
P 		104
(-3)
P 		133.9
(1)
P 		45
C 120.4
(0.8)
A 		88.9
(-2.7)
P 		86.5
(-3)
A 		104.2
(-1)
P 		139.4
(3)
P 		98.2
(-1.7)
P 		53
avr 119.2
(0.9) 		118
(0.3) 		112.9
(-2.4) 		111.8
(-3) 		113
(-2.4) 		123.2
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 38.2
(3)
A 		20.3
(-2.5)
A 		18.8
(-3)
A 		23.6
(-1.5)
A 		19
B 14.7
(-3)
A 		19.7
(0.8)
A 		20.4
(1.4)
A 		22.5
(3)
M 		8
C 28.5
(0.8)
A 		19.8
(-3)
A 		33.4
(3)
A 		27
(0.2)
P 		14
avr 27.1
(3) 		19.9
(-3) 		24.2
(0.6) 		24.4
(0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 23.8
(-2.6)
A 		44.6
(3)
P 		22.5
(-3)
A 		27.1
(-1.8)
A 		28.8
(-1.3)
P 		33.4
(-0)
P 		22
B 37.6
(-1.4)
P 		46.5
(1.8)
P 		36.2
(-1.9)
P 		33
(-3)
P 		42.2
(0.3)
P 		49.9
(3)
P 		17
C 44.6
(2.9)
A 		27.1
(-1.5)
P 		22
(-2.8)
A 		21
(-3)
P 		45.1
(3)
P 		32.9
(-0)
P 		24
avr 35.3
(1) 		39.4
(3) 		26.9
(-3) 		27
(-3) 		38.7
(2.7) 		38.7
(2.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175728_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19969
Sequence Type Exemplar sequence
Representative Public ID 5441307 NCBI
Target Description g5441307 /REP_DB=GenBank Identifier /GB=AF150958.1 /PROTEIN_GB=AAD43178.1 /CHR=X /FEA=Mapped Transcript /DEF=guidance protein MIG-13
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029489(11), NM_001029490(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029489 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-13) (mig-13) mRNA, complete cds. 11/11 None
NM_001029490 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-13) (mig-13) mRNA, complete cds. 11/11 None
F43C9.4a ENSEMBL cdna:known chromosome:CEL140:X:4796116:4800096:-1 gene:F43C9.4 11/11 A 
F43C9.4b ENSEMBL cdna:known chromosome:CEL140:X:4796421:4799590:-1 gene:F43C9.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037151 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4796421-4799612(-) 100.0 100.0
Public Domain and Genome References
Ensembl F43C9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81470 Abnormal cell migration protein 13, isoform a [Caenorhabditis elegans] ref|NP_001024660.1| abnormal cell MIGration family member (mig-13) [Caenorhabditis elegans] gb|AAD43178.1| guidance protein MIG-13 [Caenorhabditis elegans] 0.0
blast AAP82652 Abnormal cell migration protein 13, isoform b [Caenorhabditis elegans] ref|NP_001024661.1| abnormal cell MIGration family member (mig-13) [Caenorhabditis elegans] 0.0
blast CAE68651 Hypothetical protein CBG14545 [Caenorhabditis briggsae] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.3E-8
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.3E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024660.1 1 239-261
NP_001024661.1 1 233-255
F43C9.4a 1 239-261
F43C9.4b 1 233-255
Sequence
Target Sequence 
>C. ELEGANS:175728_S_AT
atatcgagctggacccattgacaactgtcagcggtgttttcgtattgttgttctcggcga
cgataatcctgtcactctgcgggttcatcatgtttgtctgttgtttgtgcaagtgtctca
agagtaccatccctattaaaggtgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCGAGCTGGACCCATTGACAAC 82 21 689 Antisense
GAGCTGGACCCATTGACAACTGTCA 498 387 694 Antisense
GACAACTGTCAGCGGTGTTTTCGTA 652 363 708 Antisense
GTCAGCGGTGTTTTCGTATTGTTGT 328 465 715 Antisense
TTTCGTATTGTTGTTCTCGGCGACG 257 671 726 Antisense
TCTCGGCGACGATAATCCTGTCACT 475 609 740 Antisense
CACTCTGCGGGTTCATCATGTTTGT 558 197 761 Antisense
GGGTTCATCATGTTTGTCTGTTGTT 304 497 769 Antisense
GTCTGTTGTTTGTGCAAGTGTCTCA 470 471 784 Antisense
AAGTGTCTCAAGAGTACCATCCCTA 523 159 799 Antisense
GTACCATCCCTATTAAAGGTGCTTC 114 459 812 Antisense
Sequence Source GenBank