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[175727_s_at]

Description g5734143 /REP_DB=GenBank Identifier /GB=AF166168.1 /PROTEIN_GB=AAD49857.1 /CHR=X /FEA=Mapped Transcript /DEF=adducin-related protein
Cluster 6grp_high1_10_10 > 14      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_total > 04      4grp_total > 54      6grp_cgc > 41      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 205.7
(3)
P 		94
(-2)
P 		105.5
(-1.5)
P 		72.1
(-3)
P 		134
B 140
(3)
P 		90.9
(-0.7)
P 		99.8
(-0)
P 		59.7
(-3)
P 		80
C 199.2
(3)
P 		155.4
(1.2)
P 		127.7
(-0)
P 		57
(-3)
P 		142
avr 181.6
(3) 		113.4
(-0.4) 		111
(-0.6) 		62.9
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 201
(3)
P 		183.2
(2.3)
P 		125.4
(-0.1)
P 		101.4
(-1.1)
P 		127.4
(-0)
P 		54.6
(-3)
A 		146
B 266.7
(3)
P 		206.4
(1.1)
P 		104.9
(-2.2)
P 		129.4
(-1.4)
P 		130.1
(-1.4)
P 		80.3
(-3)
P 		186
C 219.4
(3)
P 		204
(2.4)
P 		113.3
(-0.8)
P 		178.5
(1.5)
P 		104.1
(-1.1)
P 		52.6
(-3)
P 		167
avr 229
(3) 		197.9
(1.9) 		114.5
(-1.1) 		136.4
(-0.3) 		120.5
(-0.9) 		62.5
(-3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 74.9
(3)
P 		20.4
(-2.1)
P 		27.6
(-1.4)
P 		10.6
(-3)
P 		64
B 44.7
(3)
P 		22.4
(-1.2)
P 		23.1
(-1.1)
P 		12.7
(-3)
P 		32
C 65.9
(3)
P 		44.7
(0.7)
P 		44.5
(0.7)
P 		9.6
(-3)
P 		56
avr 61.8
(3) 		29.2
(-0.9) 		31.7
(-0.6) 		11
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 37.1
(-0.2)
P 		65.2
(3)
P 		27.3
(-1.4)
P 		25.7
(-1.6)
P 		38.4
(-0.1)
P 		13.3
(-3)
A 		52
B 92.8
(3)
P 		68.7
(0.9)
P 		25.5
(-3)
P 		34.3
(-2.2)
P 		52.9
(-0.6)
P 		30
(-2.6)
P 		67
C 81.3
(3)
P 		62.3
(1.2)
P 		28.8
(-1.9)
P 		35.9
(-1.3)
P 		33.7
(-1.5)
P 		17.6
(-3)
P 		64
avr 70.4
(3) 		65.4
(2.4) 		27.2
(-2.2) 		32
(-1.6) 		41.7
(-0.4) 		20.3
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175727_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19990
Sequence Type Exemplar sequence
Representative Public ID 5734143 NCBI
Target Description g5734143 /REP_DB=GenBank Identifier /GB=AF166168.1 /PROTEIN_GB=AAD49857.1 /CHR=X /FEA=Mapped Transcript /DEF=adducin-related protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029469(11), NM_001029468(11), NM_001029472(11), NM_001029470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029469 NCBI Caenorhabditis elegans ADDucin family member (add-1) (add-1) mRNA, complete cds. 11/11 None
NM_001029468 NCBI Caenorhabditis elegans ADDucin family member (add-1) (add-1) mRNA, complete cds. 11/11 None
NM_001029472 NCBI Caenorhabditis elegans ADDucin family member (add-1) (add-1) mRNA, complete cds. 11/11 None
NM_001029470 NCBI Caenorhabditis elegans ADDucin family member (add-1) (add-1) mRNA, complete cds. 11/11 None
F39C12.2b ENSEMBL cdna:known chromosome:CEL140:X:4854045:4860004:-1 gene:F39C12.2 11/11 A 
F39C12.2a ENSEMBL cdna:known chromosome:CEL140:X:4854048:4860004:-1 gene:F39C12.2 11/11 A 
F39C12.2e ENSEMBL cdna:known chromosome:CEL140:X:4854051:4860010:-1 gene:F39C12.2 11/11 A 
F39C12.2c ENSEMBL cdna:known chromosome:CEL140:X:4854052:4860004:-1 gene:F39C12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180760 5 4 NM_001029468 175727_s_at (11)
NM_001029469 175727_s_at (11), 175732_at (11)
NM_001029470 175727_s_at (11)
NM_001029472 175727_s_at (11), 175732_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4854029-4860005(-) 98.62 99.64
Public Domain and Genome References
Ensembl F39C12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70639 Adducin protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024640.1| ADDucin family member (add-1) [Caenorhabditis elegans] sp|Q9U9K0|ADD1_CAEEL Adducin-related protein 0.0
blast AAD49856 adducin-related protein [Caenorhabditis elegans] 0.0
blast AAP82653 Adducin protein 1, isoform e [Caenorhabditis elegans] ref|NP_001024643.1| ADDucin family member (add-1) [Caenorhabditis elegans] 0.0
blast AAK70638 Adducin protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024639.1| ADDucin family member (add-1) [Caenorhabditis elegans] 0.0
blast AAD49857 adducin-related protein [Caenorhabditis elegans] 0.0
blast AAL32219 Adducin protein 1, isoform c [Caenorhabditis elegans] ref|NP_001024641.1| ADDucin family member (add-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001303 EMBL-EBI Class II aldolase/adducin, N-terminal 5.8E-68
Sequence
Target Sequence 
>C. ELEGANS:175727_S_AT
gaaacatatgtctagtctctggacttttctttctttcccgtgaactttcaattccggtta
tggataatagcaacactctgtgctttgtcttttgtttttcgaatatttttaaaatgtcat
tttgtacgcatattttttttatattatgtatttgcatttccatcaagttttttatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACATATGTCTAGTCTCTGGACT 213 357 2038 Antisense
CTAGTCTCTGGACTTTTCTTTCTTT 398 225 2049 Antisense
TCTTTCCCGTGAACTTTCAATTCCG 527 615 2069 Antisense
CGTGAACTTTCAATTCCGGTTATGG 275 245 2076 Antisense
GGTTATGGATAATAGCAACACTCTG 314 507 2093 Antisense
GCAACACTCTGTGCTTTGTCTTTTG 375 319 2107 Antisense
TCTGTGCTTTGTCTTTTGTTTTTCG 213 609 2114 Antisense
GCTTTGTCTTTTGTTTTTCGAATAT 412 301 2119 Antisense
TAAAATGTCATTTTGTACGCATATT 67 641 2147 Antisense
ATATTATGTATTTGCATTTCCATCA 547 19 2178 Antisense
TGCATTTCCATCAAGTTTTTTATAC 597 577 2190 Antisense
Sequence Source GenBank