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[175725_at]

Description g10198078 /REP_DB=GenBank Identifier /GB=AF273825.1 /PROTEIN_GB=AAG15174.1 /CHR=X /FEA=Mapped Transcript /DEF=nuclear receptor NHR-71
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 17      4grp_highest_8_8 > 51      4grp_high_8_8 > 25      6grp_highest_nonorm > 30      6grp_total > 07      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 754
1 2 3 4 range
A 1208.8
(3)
P 		742.1
(-3)
P 		741.7
(-3)
P 		762.7
(-2.7)
P 		467
B 1383.4
(3)
P 		781.2
(-1.8)
P 		629.2
(-3)
P 		853.1
(-1.2)
P 		754
C 1126
(3)
P 		729.2
(-2.6)
P 		700.6
(-3)
P 		784.6
(-1.8)
P 		425
avr 1239.4
(3) 		750.8
(-2.3) 		690.5
(-3) 		800.1
(-1.8) 		549

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1132
1 2 3 4 5 6 range
A 1646.6
(3)
P 		880.3
(-1.4)
P 		590
(-3)
P 		592.5
(-3)
P 		712.1
(-2.3)
P 		695.3
(-2.4)
P 		1057
B 1486.2
(3)
P 		969.9
(-0.2)
P 		514.9
(-3)
P 		639
(-2.2)
P 		627.9
(-2.3)
P 		671.3
(-2)
P 		971
C 1176
(3)
P 		880.2
(0.1)
P 		748.5
(-1.3)
P 		635.8
(-2.4)
P 		583.9
(-2.9)
P 		573.7
(-3)
P 		602
avr 1436.3
(3) 		910.1
(-0.9) 		617.8
(-3) 		622.4
(-3) 		641.3
(-2.8) 		646.8
(-2.8) 		819
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 330
1 2 3 4 range
A 440.1
(3)
P 		161.1
(-2.1)
P 		193.9
(-1.5)
P 		111.6
(-3)
P 		329
B 441.2
(3)
P 		192.9
(-2)
P 		145.8
(-3)
P 		181.8
(-2.3)
P 		295
C 372.7
(3)
P 		209.7
(-1.1)
P 		244.2
(-0.2)
P 		132.3
(-3)
P 		240
avr 418
(3) 		187.9
(-2) 		194.6
(-1.9) 		141.9
(-3) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 303.5
(2.7)
P 		313.1
(3)
P 		128.5
(-3)
P 		150.3
(-2.3)
P 		214.9
(-0.2)
P 		169.3
(-1.7)
P 		185
B 517.1
(3)
P 		322.8
(0)
P 		125
(-3)
P 		169.2
(-2.3)
P 		255.1
(-1)
P 		250.3
(-1.1)
P 		392
C 435.9
(3)
P 		268.6
(-0.3)
P 		190.5
(-1.8)
P 		127.9
(-3)
P 		188.9
(-1.8)
P 		192
(-1.8)
P 		308
avr 418.8
(3) 		301.5
(0.4) 		148
(-3) 		149.1
(-3) 		219.6
(-1.4) 		203.9
(-1.8) 		271
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175725_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20009
Sequence Type Exemplar sequence
Representative Public ID 10198078 NCBI
Target Description g10198078 /REP_DB=GenBank Identifier /GB=AF273825.1 /PROTEIN_GB=AAG15174.1 /CHR=X /FEA=Mapped Transcript /DEF=nuclear receptor NHR-71
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029616(11), NM_001029617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029616 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-71) (nhr-71) mRNA, complete cds. 11/11 None
NM_001029617 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-71) (nhr-71) mRNA, complete cds. 11/11 None
K11E4.5a ENSEMBL cdna:known chromosome:CEL140:X:13747236:13751716:1 gene:K11E4.5 11/11 None
K11E4.5b ENSEMBL cdna:known chromosome:CEL140:X:13747368:13751716:1 gene:K11E4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13747246-13751718(+) 100.0 100.0
Public Domain and Genome References
Ensembl K11E4.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast Q9GTD4 Nuclear hormone receptor family member nhr-71 0.0
blast CAA94160 Hypothetical protein K11E4.5a [Caenorhabditis elegans] emb|CAB04481.3| Hypothetical protein K11E4.5a [Caenorhabditis elegans] ref|NP_001024787.1| Nuclear Hormone Receptor family member (nhr-71) [Caenorhabditis elegans] 0.0
blast AAG15174 nuclear receptor NHR-71 [Caenorhabditis elegans] 0.0
blast CAH60769 Hypothetical protein K11E4.5b [Caenorhabditis elegans] emb|CAH60764.1| Hypothetical protein K11E4.5b [Caenorhabditis elegans] ref|NP_001024788.1| Nuclear Hormone Receptor family member (nhr-71) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.4E-7
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.8E-31
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.4E-7
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.1E-28
Sequence
Target Sequence 
>C. ELEGANS:175725_AT
attgccttcctaaatctgatgtcatatactccctttattgttgattatatagttacttta
tttagtattatttagtgttgatttgttccccggtttgattttcaatctactcttctgtat
aggcacaattgctccccctcactaccttcaaaactttgtcaattagtcaccaacttcctt
ttgatttccaatgatctcagtttaaacgcattccactcatcatgtgataactattgaaaa
tttctagtatgaattgatgcacgattcgaaatatttaactactcagcgttgtattttgag
ataaacatttacggtccccccctctctgatccctaagaacctttagaatttacattcttc
cagtttcccgacaaattgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCCTTCCTAAATCTGATGTCAT 543 7 1883 Antisense
GATGTCATATACTCCCTTTATTGTT 193 409 1900 Antisense
TATTTAGTGTTGATTTGTTCCCCGG 492 661 1951 Antisense
GATTTTCAATCTACTCTTCTGTATA 475 429 1979 Antisense
TCTGTATAGGCACAATTGCTCCCCC 397 607 1996 Antisense
CCTCACTACCTTCAAAACTTTGTCA 282 265 2019 Antisense
TCACCAACTTCCTTTTGATTTCCAA 631 625 2049 Antisense
TGATCTCAGTTTAAACGCATTCCAC 673 565 2074 Antisense
AACGCATTCCACTCATCATGTGATA 597 145 2087 Antisense
CTCTCTGATCCCTAAGAACCTTTAG 617 229 2204 Antisense
TCTTCCAGTTTCCCGACAAATTGTG 635 615 2238 Antisense
Sequence Source GenBank