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[175724_s_at]

Description g1399835 /REP_DB=GenBank Identifier /GB=U59211.1 /PROTEIN_GB=AAB09670.1 /CHR=X /FEA=Mapped Transcript /DEF=embryonic membrane protein
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 67      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 98      6grp_total > 58      4grp_total > 46      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1116
1 2 3 4 range
A 1235.5
(3)
P 		421.3
(-1.7)
P 		312
(-2.3)
P 		190.5
(-3)
P 		1045
B 1306.8
(3)
P 		644.4
(-1)
P 		438.2
(-2.3)
P 		318
(-3)
P 		989
C 1173.3
(3)
P 		627.2
(-0.4)
P 		328.8
(-2.2)
P 		202.9
(-3)
P 		970
avr 1238.5
(3) 		564.3
(-1) 		359.7
(-2.3) 		237.1
(-3) 		1001

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2129
1 2 3 4 5 6 range
A 1075.7
(-0)
P 		667.1
(-1.7)
P 		390.1
(-2.8)
P 		335.9
(-3)
P 		619.8
(-1.9)
P 		1832.3
(3)
P 		1496
B 1120.9
(-0.8)
P 		909.8
(-1.4)
P 		598.3
(-2.4)
P 		424.3
(-3)
P 		565.7
(-2.5)
P 		2285.6
(3)
P 		1861
C 803.1
(-1.7)
P 		832.7
(-1.6)
P 		364.8
(-3)
P 		357.5
(-3)
P 		379.4
(-2.9)
P 		2464.5
(3)
P 		2107
avr 999.9
(-0.9) 		803.2
(-1.6) 		451.1
(-2.7) 		372.6
(-3) 		521.6
(-2.5) 		2194.1
(3) 		1822
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 449.8
(3)
P 		91.5
(-2.1)
P 		81.6
(-2.2)
P 		27.9
(-3)
P 		422
B 416.7
(3)
P 		159.1
(-1.4)
P 		101.6
(-2.4)
P 		67.8
(-3)
P 		349
C 388.4
(3)
P 		180.3
(-0.5)
P 		114.6
(-1.6)
P 		34.2
(-3)
P 		354
avr 418.3
(3) 		143.6
(-1.4) 		99.3
(-2.1) 		43.3
(-3) 		375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 780
1 2 3 4 5 6 range
A 198.3
(-1.1)
P 		237.3
(-0.5)
P 		85
(-3)
P 		85.2
(-3)
P 		187
(-1.3)
P 		446.1
(3)
P 		361
B 390
(-0.7)
P 		302.8
(-1.5)
P 		145.3
(-2.7)
P 		112.4
(-3)
P 		229.8
(-2)
P 		852.3
(3)
P 		740
C 297.7
(-1.2)
P 		254.1
(-1.5)
P 		92.8
(-2.8)
P 		71.9
(-3)
P 		122.8
(-2.6)
P 		825
(3)
P 		753
avr 295.3
(-1) 		264.7
(-1.3) 		107.7
(-2.8) 		89.8
(-3) 		179.9
(-2.1) 		707.8
(3) 		618
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175724_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19980
Sequence Type Exemplar sequence
Representative Public ID 1399835 NCBI
Target Description g1399835 /REP_DB=GenBank Identifier /GB=U59211.1 /PROTEIN_GB=AAB09670.1 /CHR=X /FEA=Mapped Transcript /DEF=embryonic membrane protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076601
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F22F4.2.1 ENSEMBL cdna:known chromosome:CEL140:X:5996114:5998201:1 gene:F22F4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5996113-5998199(+) 100.0 100.0
Public Domain and Genome References
Ensembl F22F4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96220 Innexin protein 3 [Caenorhabditis elegans] ref|NP_509002.2| INneXin family member (inx-3) [Caenorhabditis elegans] sp|Q19746|INX3_CAEEL Innexin-3 gb|AAB09670.1| embryonic membrane protein 0.0
blast T16141 hypothetical protein F22F4.2 - Caenorhabditis elegans 0.0
blast CAE68849 Hypothetical protein CBG14811 [Caenorhabditis briggsae] emb|CAE68833.1| Hypothetical protein CBG14794 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
F22F4.2.1 4 27-49,101-123,191-213,280-302
Sequence
Target Sequence 
>C. ELEGANS:175724_S_AT
taaccacaaacctctctcaaggacctaattctcaaaattcaacgccgaatctcactttct
aaaagtctaattgtttttcttcaatcgaatgtagagctagttggctactttgctacgacc
ttcattttcctgttaagttcttcttgtcattcacatcttccactttgtttcaataattca
tgtcacgctctgttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACCACAAACCTCTCTCAAGGACC 73 637 1295 Antisense
AACCTCTCTCAAGGACCTAATTCTC 337 147 1303 Antisense
CCTAATTCTCAAAATTCAACGCCGA 55 265 1318 Antisense
AACGCCGAATCTCACTTTCTAAAAG 302 145 1335 Antisense
GTCTAATTGTTTTTCTTCAATCGAA 424 469 1359 Antisense
GAGCTAGTTGGCTACTTTGCTACGA 283 387 1388 Antisense
CTACGACCTTCATTTTCCTGTTAAG 378 223 1407 Antisense
TCATTTTCCTGTTAAGTTCTTCTTG 678 619 1416 Antisense
AAGTTCTTCTTGTCATTCACATCTT 612 155 1429 Antisense
TTCACATCTTCCACTTTGTTTCAAT 318 687 1444 Antisense
ATAATTCATGTCACGCTCTGTTCAC 675 25 1467 Antisense
Sequence Source GenBank