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[175723_at]

Description g4218967 /REP_DB=GenBank Identifier /GB=AF097319.1 /PROTEIN_GB=AAD12252.1 /CHR=X /FEA=Mapped Transcript /DEF=Sox domain protein COG-2
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 71      6grp_total > 92      4grp_total > 54      6grp_cgc > 97      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 383
1 2 3 4 range
A 496.4
(3)
P 		274
(-0.9)
P 		237.5
(-1.6)
P 		158.1
(-3)
P 		338
B 471.6
(3)
P 		252.6
(-0.9)
P 		213.1
(-1.6)
P 		136.8
(-3)
P 		335
C 430.2
(3)
P 		283.5
(0.2)
P 		250.4
(-0.4)
P 		113.9
(-3)
P 		316
avr 466.1
(3) 		270
(-0.6) 		233.7
(-1.2) 		136.3
(-3) 		330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 345.4
(-0.8)
P 		511.7
(2.6)
P 		241.4
(-3)
P 		360.5
(-0.5)
P 		528.7
(3)
P 		242.6
(-3)
P 		287
B 336.4
(0.1)
P 		372
(1)
P 		330.6
(0)
P 		461.3
(3)
P 		393.6
(1.4)
P 		199.5
(-3)
P 		262
C 377.5
(1.4)
P 		365.9
(1.1)
P 		373.7
(1.3)
P 		433.8
(2.7)
P 		447
(3)
P 		191.1
(-3)
P 		256
avr 353.1
(0.5) 		416.5
(2) 		315.2
(-0.5) 		418.5
(2.1) 		456.4
(3) 		211.1
(-3) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 180.7
(3)
P 		59.5
(-1.6)
P 		62.1
(-1.5)
P 		23.1
(-3)
P 		158
B 150.4
(3)
P 		62.4
(-1.4)
P 		49.4
(-2)
P 		29.2
(-3)
P 		121
C 142.4
(3)
P 		81.5
(0)
P 		87.3
(0.3)
P 		19.2
(-3)
P 		123
avr 157.8
(3) 		67.8
(-1) 		66.3
(-1.1) 		23.8
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 63.7
(-2.5)
P 		182
(3)
P 		52.6
(-3)
P 		91.4
(-1.2)
P 		159.5
(2)
P 		59.1
(-2.7)
P 		129
B 117
(-0)
P 		123.8
(0.5)
P 		80.3
(-2.6)
P 		122.2
(0.4)
P 		159.9
(3)
P 		74.4
(-3)
P 		86
C 139.9
(2.7)
P 		111.7
(0.6)
P 		95.1
(-0.7)
P 		87.2
(-1.3)
P 		144.6
(3)
P 		64
(-3)
P 		81
avr 106.9
(-0.2) 		139.2
(2) 		76
(-2.3) 		100.3
(-0.7) 		154.7
(3) 		65.8
(-3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175723_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19995
Sequence Type Exemplar sequence
Representative Public ID 4218967 NCBI
Target Description g4218967 /REP_DB=GenBank Identifier /GB=AF097319.1 /PROTEIN_GB=AAD12252.1 /CHR=X /FEA=Mapped Transcript /DEF=Sox domain protein COG-2
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029747(11), NM_001029748(11), NM_001029749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029747 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-13) (egl-13) mRNA, complete cds. 11/11 None
NM_001029748 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-13) (egl-13) mRNA, complete cds. 11/11 None
NM_001029749 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-13) (egl-13) mRNA, complete cds. 11/11 None
T22B7.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:5668278:5674018:1 gene:T22B7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180833 4 3 NM_001029747 175723_at (11), 188167_s_at (11)
NM_001029748 175723_at (11), 188167_s_at (11)
NM_001029749 175723_at (11), 188167_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5668275-5674018(+) 100.0 100.0
Public Domain and Genome References
Ensembl T22B7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04597 Egg laying defective protein 13, isoform a [Caenorhabditis elegans] ref|NP_001024918.1| EGg Laying defective family member (egl-13) [Caenorhabditis elegans] gb|AAD12252.1| Sox domain protein COG-2 [Caenorhabditis elegans] 0.0
blast AAX88814 Egg laying defective protein 13, isoform c [Caenorhabditis elegans] ref|NP_001024920.1| EGg Laying defective family member (egl-13) [Caenorhabditis elegans] 0.0
blast CAE68778 Hypothetical protein CBG14721 [Caenorhabditis briggsae] 0.0
blast AAX88814 Egg laying defective protein 13, isoform c [Caenorhabditis elegans] ref|NP_001024920.1| EGg Laying defective family member (egl-13) [Caenorhabditis elegans] 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.4E-29
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.4E-29
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 1.4E-29
Sequence
Target Sequence 
>C. ELEGANS:175723_AT
aattttgtcgtgttgttctcatgccagctttactttggtactcctcacccaccacattta
cttacctggtccatcatgtattattacagtatctcaatttttattttttttagcagatcg
gtttcttgattttcaaaatcttggacaatcaaaatctgcttgccggtggaccaatgcatt
ttttttccattcattttctctttcctttcctcatacaatagcataatctgaagcgttatt
tccttttctatgtgtttccttattgtacctctttcaaaagcttcccacactccaagaatc
tcagcgtttccgcattgtttcctacatattctgaagactgcatttcagtttgatttactg
tgttcttcatatcaattcctttcctattcataataggccttttttccattttttttcctc
cttttactgcattgtgttcccattttccacctggcaccagatcttttcctttatcttgtt
gcaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTTGTCGTGTTGTTCTCATGCC 330 175 1499 Antisense
ATGCCAGCTTTACTTTGGTACTCCT 429 39 1519 Antisense
CACCCACCACATTTACTTACCTGGT 227 201 1544 Antisense
GCTTGCCGGTGGACCAATGCATTTT 294 307 1656 Antisense
TCTTTCCTTTCCTCATACAATAGCA 252 615 1697 Antisense
TATTTCCTTTTCTATGTGTTTCCTT 183 663 1735 Antisense
ATGTGTTTCCTTATTGTACCTCTTT 382 49 1748 Antisense
GAATCTCAGCGTTTCCGCATTGTTT 88 329 1794 Antisense
CATATCAATTCCTTTCCTATTCATA 692 213 1866 Antisense
ATTTTCCACCTGGCACCAGATCTTT 190 15 1940 Antisense
TCTTTTCCTTTATCTTGTTGCAACC 208 615 1960 Antisense
Sequence Source GenBank