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[175722_s_at]

Description g9652155 /REP_DB=GenBank Identifier /GB=AF275634.1 /PROTEIN_GB=AAF91417.1 /CHR=X /FEA=Mapped Transcript /DEF=SAX-1 Ndr protein kinase
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 75      6grp_total > 09      4grp_total > 14      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 719
1 2 3 4 range
A 914.2
(3)
P 		521.6
(-2.7)
P 		504.2
(-3)
P 		916.9
(3)
P 		413
B 863.1
(0.1)
P 		537.7
(-2.9)
P 		523.4
(-3)
P 		1170.6
(3)
P 		647
C 922.5
(3)
P 		451.4
(-3)
P 		499.8
(-2.4)
P 		856.3
(2.2)
P 		471
avr 899.9
(2) 		503.6
(-3) 		509.1
(-2.9) 		981.3
(3) 		478

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 561
1 2 3 4 5 6 range
A 1032.9
(3)
P 		791.9
(0.3)
P 		499.5
(-3)
P 		787.3
(0.2)
P 		988.2
(2.5)
P 		712.2
(-0.6)
P 		533
B 910.3
(2.8)
P 		845.8
(0.8)
P 		818.7
(-0)
P 		917.7
(3)
P 		720.2
(-3)
P 		722.1
(-2.9)
P 		198
C 1060.8
(3)
P 		691.1
(-3)
P 		753.4
(-2)
P 		926.3
(0.8)
P 		690.6
(-3)
P 		819.2
(-0.9)
P 		370
avr 1001.3
(3) 		776.3
(-1.3) 		690.5
(-3) 		877.1
(0.6) 		799.7
(-0.9) 		751.2
(-1.8) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 332.9
(3)
P 		113.2
(-3)
P 		131.8
(-2.5)
P 		134.2
(-2.4)
P 		220
B 275.2
(3)
P 		132.8
(-2.6)
P 		121.3
(-3)
P 		249.5
(2)
P 		154
C 305.4
(3)
P 		129.8
(-3)
P 		174.2
(-1.5)
P 		144.4
(-2.5)
P 		176
avr 304.5
(3) 		125.3
(-3) 		142.4
(-2.4) 		176
(-1.3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 190.4
(-0.4)
P 		281.6
(2.5)
P 		108.8
(-3)
P 		199.7
(-0.1)
P 		298.2
(3)
P 		173.4
(-1)
P 		189
B 316.7
(3)
P 		281.5
(1.2)
P 		198.8
(-3)
P 		243.1
(-0.7)
P 		292.6
(1.8)
P 		269.3
(0.6)
P 		118
C 393.2
(3)
P 		210.9
(-2.3)
P 		191.8
(-2.8)
P 		186.3
(-3)
P 		223.5
(-1.9)
P 		274.2
(-0.5)
P 		207
avr 300.1
(3) 		258
(1.1) 		166.5
(-3) 		209.7
(-1.1) 		271.4
(1.7) 		239
(0.3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175722_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20031
Sequence Type Exemplar sequence
Representative Public ID 9652155 NCBI
Target Description g9652155 /REP_DB=GenBank Identifier /GB=AF275634.1 /PROTEIN_GB=AAF91417.1 /CHR=X /FEA=Mapped Transcript /DEF=SAX-1 Ndr protein kinase
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076226(11), NM_001029687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076226 NCBI Caenorhabditis elegans Sensory AXon guidance family member (sax-1) (sax-1) mRNA, complete cds. 11/11 None
NM_001029687 NCBI Caenorhabditis elegans Sensory AXon guidance family member (sax-1) (sax-1) mRNA, complete cds. 11/11 None
R11G1.4a.1 ENSEMBL cdna:known chromosome:CEL140:X:3645866:3650137:-1 gene:R11G1.4 11/11 None
R11G1.4a.2 ENSEMBL cdna:known chromosome:CEL140:X:3645866:3650139:-1 gene:R11G1.4 11/11 None
R11G1.4b ENSEMBL cdna:known chromosome:CEL140:X:3646311:3650101:-1 gene:R11G1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030141 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3646307-3650102(-) 100.0 100.0
Public Domain and Genome References
Ensembl R11G1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN39666 Sensory axon guidance protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024858.1| Sensory AXon guidance family member (sax-1) [Caenorhabditis elegans] 0.0
blast AAK82913 Sensory axon guidance protein 1, isoform a [Caenorhabditis elegans] ref|NP_508627.4| Sensory AXon guidance family member (sax-1) [Caenorhabditis elegans] gb|AAF91417.1| SAX-1 Ndr protein kinase [Caenorhabditis elegans] 0.0
blast T16718 hypothetical protein R11G1.4 - Caenorhabditis elegans 0.0
Protein Families
Method ID Description E-Value
hanks 1.9.4 AGC group; AGC Other; cot-1 7.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 7.0E-74
Sequence
Target Sequence 
>C. ELEGANS:175722_S_AT
gaagggcggccaacaaggtacatccgactgaacatatggatgtggttcttccctaaaagt
gttaatatctgttttataatggaaatactacatatgtaatatacggacaatttgatgtcc
tttgtaaatgctgccactctctttttttggtacagtgtctcgttttcattgaattccaaa
cccttccaaatctacatattttcattaatctctagttttgggttttaacgtgcacttagc
tttatagtcatacacacacaaacattttcttactctctctctccgtatttgtaagttttt
cccagtttccagtccatctgaactatatactcgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGGCGGCCAACAAGGTACATCC 161 335 1392 Antisense
GATGTGGTTCTTCCCTAAAAGTGTT 222 409 1430 Antisense
ATGTCCTTTGTAAATGCTGCCACTC 198 49 1506 Antisense
CTGCCACTCTCTTTTTTTGGTACAG 571 235 1522 Antisense
GGTACAGTGTCTCGTTTTCATTGAA 706 503 1540 Antisense
TTCATTGAATTCCAAACCCTTCCAA 294 687 1556 Antisense
CCAAACCCTTCCAAATCTACATATT 670 275 1567 Antisense
TGGGTTTTAACGTGCACTTAGCTTT 392 487 1610 Antisense
ACACAAACATTTTCTTACTCTCTCT 39 111 1647 Antisense
CTCTCTCTCTCCGTATTTGTAAGTT 502 231 1664 Antisense
GTCCATCTGAACTATATACTCGCAC 303 477 1703 Antisense
Sequence Source GenBank