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[175718_s_at]

Description g440174 /REP_DB=GenBank Identifier /GB=U01183.1 /PROTEIN_GB=AAC03567.1 /CHR=3 /FEA=Mapped Transcript /DEF=flightless-I homolog
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 51      6grp_total > 03      4grp_total > 31      6grp_cgc > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 434
1 2 3 4 range
A 608.4
(3)
P 		174.5
(-3)
P 		222.2
(-2.3)
P 		384.1
(-0.1)
P 		434
B 524.5
(3)
P 		257.9
(-1.9)
P 		197.3
(-3)
P 		417.3
(1)
P 		327
C 505.6
(3)
P 		400.6
(-1.7)
P 		499.9
(2.7)
P 		370.3
(-3)
P 		135
avr 546.2
(3) 		277.7
(-3) 		306.5
(-2.4) 		390.6
(-0.5) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 667
1 2 3 4 5 6 range
A 392.2
(-2.2)
P 		602.8
(2.6)
P 		359.1
(-3)
P 		619.6
(3)
P 		585.7
(2.2)
P 		384
(-2.4)
P 		261
B 925.4
(3)
P 		523.6
(-1)
P 		329.6
(-3)
P 		763.9
(1.4)
P 		381
(-2.5)
P 		517.5
(-1.1)
P 		596
C 567.5
(2.6)
P 		590.1
(3)
P 		577.4
(2.8)
P 		472.7
(0.9)
P 		258
(-3)
P 		473.2
(0.9)
P 		332
avr 628.4
(3) 		572.2
(1.5) 		422
(-2.6) 		618.7
(2.7) 		408.2
(-3) 		458.2
(-1.6) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 221.5
(3)
P 		37.9
(-3)
P 		58.1
(-2.3)
P 		56.2
(-2.4)
P 		184
B 167.2
(3)
P 		63.7
(-2.1)
P 		45.7
(-3)
P 		88.9
(-0.9)
P 		122
C 167.4
(2.6)
P 		115.2
(-0.2)
P 		174.2
(3)
P 		62.4
(-3)
P 		112
avr 185.4
(3) 		72.3
(-2.8) 		92.7
(-1.8) 		69.2
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 72.3
(-3)
P 		214.4
(3)
P 		78.2
(-2.8)
P 		157.1
(0.6)
P 		176.7
(1.4)
P 		93.5
(-2.1)
P 		142
B 322
(3)
P 		174.3
(-0.7)
P 		80
(-3)
P 		202.3
(0)
P 		154.8
(-1.1)
P 		193
(-0.2)
P 		242
C 210.4
(3)
P 		180.1
(1.6)
P 		147
(0)
P 		95.1
(-2.5)
P 		83.5
(-3)
P 		158.4
(0.5)
P 		127
avr 201.6
(3) 		189.6
(2.3) 		101.7
(-3) 		151.5
(-0) 		138.3
(-0.8) 		148.3
(-0.2) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175718_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19770
Sequence Type Exemplar sequence
Representative Public ID 440174 NCBI
Target Description g440174 /REP_DB=GenBank Identifier /GB=U01183.1 /PROTEIN_GB=AAC03567.1 /CHR=3 /FEA=Mapped Transcript /DEF=flightless-I homolog
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066512 NCBI Caenorhabditis elegans FLI-I (Drosophila flightless) homolog family member (fli-1) (fli-1) mRNA, complete cds. 11/11 A 
B0523.5 ENSEMBL cdna:known chromosome:CEL140:III:8675225:8683977:-1 gene:B0523.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022053 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8675314-8683972(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fli-1
Ensembl B0523.5
Entrez Gene 176215 Entrez gene
SwissProt P34268 EMBL-EBI
WormBase CE36522 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640391_AT flightless I dm
DROSGENOME1:143161_AT flightless I dm
CHICKEN:GGAAFFX.11777.1.S1_AT flightless I homolog (Drosophila) gga
CHICKEN:GGAAFFX.3112.1.S1_S_AT flightless I homolog (Drosophila) gga
HG-U133_PLUS_2:212024_X_AT flightless I homolog (Drosophila) hs
HG-U133A:212024_X_AT flightless I homolog (Drosophila) hs
HG-U133A_2:212024_X_AT flightless I homolog (Drosophila) hs
HG-U133_PLUS_2:212025_S_AT flightless I homolog (Drosophila) hs
HG-U133A_2:212025_S_AT flightless I homolog (Drosophila) hs
HG-U133A:212025_S_AT flightless I homolog (Drosophila) hs
HUGENEFL:U80184_RNA1_AT flightless I homolog (Drosophila) hs
U133_X3P:HS.83849.2.S2_3P_A_AT flightless I homolog (Drosophila) hs
U133_X3P:HS.83849.2.S1_3P_A_AT flightless I homolog (Drosophila) hs
U133_X3P:HS.83849.1.A1_3P_A_AT flightless I homolog (Drosophila) hs
HG-U133A_2:222065_S_AT flightless I homolog (Drosophila) hs
HG-FOCUS:222065_S_AT flightless I homolog (Drosophila) hs
HG-U133_PLUS_2:222065_S_AT flightless I homolog (Drosophila) hs
HG-U133A:222065_S_AT flightless I homolog (Drosophila) hs
HG-U133_PLUS_2:227302_S_AT flightless I homolog (Drosophila) hs
HG-U133B:227302_S_AT flightless I homolog (Drosophila) hs
HG-U95AV2:33133_AT flightless I homolog (Drosophila) hs
HG-U95E:88279_S_AT flightless I homolog (Drosophila) hs
HG-U95E:88281_S_AT flightless I homolog (Drosophila) hs
MU11KSUBA:C79694_RC_S_AT flightless I homolog (Drosophila) mm
MU11KSUBA:AA038461_AT flightless I homolog (Drosophila) mm
MU11KSUBA:AA038461_G_AT flightless I homolog (Drosophila) mm
MG-U74AV2:95489_AT flightless I homolog (Drosophila) mm
MG-U74AV2:97593_F_AT flightless I homolog (Drosophila) mm
MG-U74AV2:97594_R_AT flightless I homolog (Drosophila) mm
MOE430A:1439356_AT flightless I homolog (Drosophila) mm
MOUSE430A_2:1439356_AT flightless I homolog (Drosophila) mm
MOUSE430_2:1439356_AT flightless I homolog (Drosophila) mm
MOE430A:1416044_AT flightless I homolog (Drosophila) mm
MOUSE430A_2:1416044_AT flightless I homolog (Drosophila) mm
MOUSE430_2:1416044_AT flightless I homolog (Drosophila) mm
MOE430A:1448189_A_AT flightless I homolog (Drosophila) mm
MOUSE430A_2:1448189_A_AT flightless I homolog (Drosophila) mm
MOUSE430_2:1448189_A_AT flightless I homolog (Drosophila) mm
MU19KSUBC:TC40240_AT Flightless I homolog (Drosophila), mRNA (cDNA clone IMAGE:4161799) mm
MU19KSUBC:TC41738_AT Flightless I homolog (Drosophila), mRNA (cDNA clone IMAGE:4161799) mm
RG-U34B:RC_AA850662_AT flightless I homolog (Drosophila) (predicted) rn
RAE230A:1372113_AT flightless I homolog (Drosophila) (predicted) rn
RAT230_2:1372113_AT flightless I homolog (Drosophila) (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37088 Fli-i (drosophila flightless) homolog protein 1 [Caenorhabditis elegans] ref|NP_498913.2| FLI-I (Drosophila flightless) homolog family member (fli-1) [Caenorhabditis elegans] sp|P34268|FLII_CAEEL Flightless-I protein homolog gb|AAC03567.1| flightless-I homolog [Caenorhabditis elegans] 0.0
blast CAE57608 Hypothetical protein CBG00589 [Caenorhabditis briggsae] 0.0
blast S44732 b0523.5 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.051
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.036
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.013
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.38
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.072
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.057
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 8.8E-5
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.23
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.011
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.011
Pfam IPR007123 EMBL-EBI Gelsolin region 1.5E-18
Pfam IPR007123 EMBL-EBI Gelsolin region 3.9E-19
Pfam IPR007123 EMBL-EBI Gelsolin region 1.2E-19
Pfam IPR007123 EMBL-EBI Gelsolin region 3.4E-16
Sequence
Target Sequence 
>C. ELEGANS:175718_S_AT
ctagtcccttgtcaataatttcaattttgaaattttccactttataatgtatatctacat
aaaaaaaaccccagttttccattttttgcataatcaattcctaaataatttttccccata
attttctcatatttattatttgttttttcccaatactaatttattgcccgttcccattca
attttatcacttcaaactttgctcatttctccttttaaatacgcagaaataatgtgcatt
tccatgattttatggccattattttttatggtgattaattttgtttatttttttttgtga
aatatgatttccccgccatcccttattctacacaattgtccctgattagacgagtatagg
aatatttgttttcttccattgattttatagggtcttaatttttcaattttcatattttct
tcgaaactcgttctcaattttgagccttcttcacttgtcaaataattttccttatttctc
ccccttaatttttttgaaatccctcaaatgttcttggtgtttctcatgcatattactgta
gaaaaatgactggtgctctcctatcatgttcttgcgatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAGTCCCTTGTCAATAATTTCAAT 695 221 3910 Antisense
TCCCAATACTAATTTATTGCCCGTT 550 597 4057 Antisense
CCCGTTCCCATTCAATTTTATCACT 254 259 4076 Antisense
CTCATTTCTCCTTTTAAATACGCAG 85 229 4111 Antisense
GTGCATTTCCATGATTTTATGGCCA 666 479 4143 Antisense
ATATTTTCTTCGAAACTCGTTCTCA 361 19 4321 Antisense
TCGAAACTCGTTCTCAATTTTGAGC 491 601 4330 Antisense
AAATGTTCTTGGTGTTTCTCATGCA 193 121 4415 Antisense
GGTGTTTCTCATGCATATTACTGTA 32 501 4425 Antisense
GAAAAATGACTGGTGCTCTCCTATC 477 355 4450 Antisense
CTCTCCTATCATGTTCTTGCGATAT 576 231 4465 Antisense
Sequence Source GenBank