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[175716_at] transcription factor lin-29

Description g840632 /REP_DB=GenBank Identifier /GB=L39212.1 /PROTEIN_GB=AAC37255.1 /CHR=2 /FEA=Mapped Transcript /DEF=transcription factor
Cluster 6grp_total > 82      4grp_total > 25      6grp_cgc > 86      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 69.9
(-3)
A 		133.8
(-0.6)
A 		143.7
(-0.2)
A 		227.5
(3)
A 		158
B 77.1
(-3)
A 		173.9
(3)
A 		123.8
(-0.1)
P 		148.7
(1.4)
P 		97
C 42.4
(-3)
A 		194.5
(0)
A 		167.5
(-0.5)
P 		342.2
(3)
P 		300
avr 63.1
(-3) 		167.4
(0.5) 		145
(-0.2) 		239.5
(3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 142
(-3)
A 		176.3
(-2)
M 		199.4
(-1.2)
P 		250.1
(0.3)
P 		338.5
(3)
P 		143
(-3)
A 		197
B 94
(-3)
A 		269.3
(0.6)
P 		174.6
(-1.4)
P 		388.6
(3)
P 		295.1
(1.1)
P 		174.1
(-1.4)
P 		295
C 83.4
(-3)
A 		252.2
(2.8)
P 		235.4
(2.2)
P 		258.7
(3)
P 		257.8
(3)
P 		162.5
(-0.3)
P 		175
avr 106.5
(-3) 		232.6
(0.9) 		203.1
(0) 		299.1
(3) 		297.1
(2.9) 		159.9
(-1.3) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 25.4
(-3)
A 		29
(-1.2)
A 		37.6
(3)
A 		33.3
(0.9)
A 		12
B 24.6
(-3)
A 		42.9
(3)
A 		28.7
(-1.7)
P 		31.7
(-0.7)
P 		18
C 14
(-3)
A 		55.9
(2.7)
A 		58.4
(3)
P 		57.7
(2.9)
P 		44
avr 21.3
(-3) 		42.6
(3) 		41.6
(2.7) 		40.9
(2.5) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 26.2
(-3)
A 		62.7
(-0.1)
M 		43.4
(-1.6)
P 		63.4
(-0.1)
P 		102.2
(3)
P 		34.8
(-2.3)
A 		76
B 32.7
(-3)
A 		89.6
(0.9)
P 		42.4
(-2.3)
P 		102.9
(1.8)
P 		119.9
(3)
P 		64.9
(-0.8)
P 		87
C 30.9
(-3)
A 		76.9
(2.3)
P 		59.9
(0.3)
P 		52
(-0.6)
P 		83.4
(3)
P 		54.4
(-0.3)
P 		53
avr 29.9
(-3) 		76.4
(0.9) 		48.6
(-1.4) 		72.8
(0.6) 		101.8
(3) 		51.4
(-1.2) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19712
Sequence Type Exemplar sequence
Representative Public ID 840632 NCBI
Target Description g840632 /REP_DB=GenBank Identifier /GB=L39212.1 /PROTEIN_GB=AAC37255.1 /CHR=2 /FEA=Mapped Transcript /DEF=transcription factor
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064144 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-29) (lin-29) mRNA, complete cds. 11/11 A 
W03C9.4 ENSEMBL cdna:known chromosome:CEL140:II:11917546:11935247:-1 gene:W03C9.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003383 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11917542-11935246(-) 98.7 100.0
Public Domain and Genome References
Gene Title transcription factor lin-29
Gene Symbol lin-29
Ensembl W03C9.4
Entrez Gene 174830 Entrez gene
SwissProt Q22867 EMBL-EBI
WormBase CE28257 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60308 Hypothetical protein W03C9.4 [Caenorhabditis elegans] emb|CAB60292.2| Hypothetical protein W03C9.4 [Caenorhabditis elegans] emb|CAB60307.2| Hypothetical protein W03C9.4 [Caenorhabditis elegans] ref|NP_496545.1| abnormal cell LINeage family member (lin-29) [Caenorhabditis elegans] gb|AAC37255.1| transcription factor 0.0
blast CAE59394 Hypothetical protein CBG02753 [Caenorhabditis briggsae] 0.0
blast T26491 hypothetical protein Y17G7A.2 - Caenorhabditis elegans 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.3E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.3E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.9E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.6E-6
Sequence
Target Sequence 
>C. ELEGANS:175716_AT
taagatcttcgtcttcgtttcttcactgcaatcattttttttttggtcgttcatatgttc
tccttcctagtacaatttgtgcattttcattgttttctagaattccttcattttggcttt
attctagcaccatttttcacattttctgtccccacacacacacaaaatacattgccaatt
atatatttttaattacaaattcccccaaaaatccgttgttgttttcttttctccggtgat
tgacactttttatttcattttttgtaaaatattacacattcgccggtttttccatcgaaa
ctgactaacgtgtaatactaataatcgtattcaaaatgtttttttttcaaattcctgcca
cattcttcttcatctgtatgcgtttcaaacgccccatccatccacccggttgccctttcc
aacattttcagccccgaaactcgcccttccagctctaaattagatccattttgttgaaga
attttcaccggagaacctttttttattaatactattttcctttttttcaactcttatgca
agcattttctcactgaaattcgttatctccccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGATCTTCGTCTTCGTTTCTTCA 403 637 1716 Antisense
TTTGGTCGTTCATATGTTCTCCTTC 410 667 1757 Antisense
TTCTCCTTCCTAGTACAATTTGTGC 469 693 1773 Antisense
AATTCCTTCATTTTGGCTTTATTCT 56 179 1816 Antisense
TATTCTAGCACCATTTTTCACATTT 10 665 1835 Antisense
TGTTTTCTTTTCTCCGGTGATTGAC 381 559 1935 Antisense
ATTACACATTCGCCGGTTTTTCCAT 166 11 1986 Antisense
CCACATTCTTCTTCATCTGTATGCG 616 275 2073 Antisense
TATGCGTTTCAAACGCCCCATCCAT 204 657 2092 Antisense
CGCCCTTCCAGCTCTAAATTAGATC 89 257 2157 Antisense
CTCACTGAAATTCGTTATCTCCCCC 177 227 2264 Antisense
Sequence Source GenBank