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[175715_s_at]

Description g4432966 /REP_DB=GenBank Identifier /GB=D86740.1 /PROTEIN_GB=BAA13165.1 /CHR=X /FEA=Mapped Transcript /DEF=ATP synthase subunit
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 03      6grp_total > 06      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3905
1 2 3 4 range
A 4058.7
(0.8)
P 		5365.3
(3)
P 		4302.6
(1.2)
P 		1765.2
(-3)
P 		3600
B 4635.3
(3)
P 		4466.5
(2.7)
P 		4105.6
(2)
P 		1561.1
(-3)
P 		3074
C 3505.6
(1.5)
P 		4197.1
(3)
P 		3392.3
(1.2)
P 		1460.6
(-3)
P 		2737
avr 4066.5
(1.8) 		4676.3
(3) 		3933.5
(1.6) 		1595.6
(-3) 		3081

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3463
1 2 3 4 5 6 range
A 4764
(3)
P 		3224.2
(0.2)
P 		2274.2
(-1.6)
P 		1658.5
(-2.7)
P 		2236.3
(-1.7)
P 		1521.4
(-3)
P 		3243
B 4079
(3)
P 		3050.9
(0.7)
P 		2410.4
(-0.7)
P 		2114.8
(-1.4)
P 		1824.9
(-2)
P 		1375.5
(-3)
P 		2704
C 4090.7
(3)
P 		3048.3
(0.8)
P 		2705.8
(0)
P 		1301.1
(-3)
P 		1989.7
(-1.5)
P 		1410.3
(-2.8)
P 		2790
avr 4311.2
(3) 		3107.8
(0.5) 		2463.5
(-0.9) 		1691.5
(-2.5) 		2017
(-1.8) 		1435.7
(-3) 		2876
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1232
1 2 3 4 range
A 1477.8
(3)
P 		1164.7
(1.5)
P 		1124.8
(1.3)
P 		258.4
(-3)
P 		1219
B 1478.2
(3)
P 		1103.1
(1)
P 		951.4
(0.2)
P 		332.7
(-3)
P 		1146
C 1160.4
(2.7)
P 		1206.7
(3)
P 		1182.3
(2.8)
P 		246.3
(-3)
P 		960
avr 1372.1
(3) 		1158.2
(1.8) 		1086.2
(1.4) 		279.1
(-3) 		1093

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1255
1 2 3 4 5 6 range
A 878.2
(0.9)
P 		1146.7
(3)
P 		495.3
(-2)
P 		420.6
(-2.6)
P 		674.8
(-0.6)
P 		370.4
(-3)
P 		776
B 1419.3
(3)
P 		1015.5
(0.3)
P 		585.3
(-2.5)
P 		560.1
(-2.7)
P 		741.4
(-1.5)
P 		512.9
(-3)
P 		906
C 1516.2
(3)
P 		930.1
(0.2)
P 		688.7
(-1)
P 		261.6
(-3)
P 		643.8
(-1.2)
P 		472.1
(-2)
P 		1255
avr 1271.2
(3) 		1030.8
(1.3) 		589.8
(-1.8) 		414.1
(-3) 		686.7
(-1.1) 		451.8
(-2.7) 		857
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175715_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20041
Sequence Type Exemplar sequence
Representative Public ID 4432966 NCBI
Target Description g4432966 /REP_DB=GenBank Identifier /GB=D86740.1 /PROTEIN_GB=BAA13165.1 /CHR=X /FEA=Mapped Transcript /DEF=ATP synthase subunit
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029222(11), NM_001029223(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029222 NCBI Caenorhabditis elegans GLutamate Transporter family member (glt-1) (glt-1) mRNA, complete cds. 11/11 None
NM_001029223 NCBI Caenorhabditis elegans GLutamate Transporter family member (glt-1) (glt-1) mRNA, complete cds. 11/11 None
C12D12.2a.1 ENSEMBL cdna:known chromosome:CEL140:X:3496013:3499156:1 gene:C12D12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040496 3/11 Cross Hyb Matching Probes None
GENEFINDER00000040501 3/11 Cross Hyb Matching Probes None
C12D12.2a.2 3/11 Cross Hyb Matching Probes None
C12D12.2b 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3496011-3499153(+) 99.78 99.78
Public Domain and Genome References
Ensembl C12D12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00857 Glutamate transporter family protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024393.1| GLutamate Transporter family member (glt-1) [Caenorhabditis elegans] sp|Q10901|EAA1_CAEEL Excitatory amino acid transporter (Sodium-dependent glutamate/ aspartate transporter) dbj|BAA21840.1| glutamate transporter [Caenorhabditis elegans] dbj|BAA13164.1| glutamate transporter [Caenorhabditis elegans] 0.0
blast AAB41909 CeGlt-2 0.0
blast AAL00858 Glutamate transporter family protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024394.1| GLutamate Transporter family member (glt-1) [Caenorhabditis elegans] 0.0
blast AAB41910 CeGlt-1 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001991 EMBL-EBI Sodium:dicarboxylate symporter 1.0E-126
Pfam IPR001991 EMBL-EBI Sodium:dicarboxylate symporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024393.1 9 21-43,58-80,93-115,200-222,243-264,279-301,313-335,364-386,398-420
NP_001024394.1 9 9-31,46-68,81-103,189-211,232-253,268-290,302-324,353-375,387-409
C12D12.2a.1 9 21-43,58-80,93-115,200-222,243-264,279-301,313-335,364-386,398-420
Sequence
Target Sequence 
>C. ELEGANS:175715_S_AT
ggcggtgtataatagcctaccaacggatgacgagaagcacactcattgataatcattgcc
ccagattttaatcacaccgaattatgatttctaaattttctcaactttcaaatttgcttt
gttttatacccttaacttctcaaaataactttctcggtttcatcacccgacgcttcatct
tcccgattgaaatttgcttgacaccctcccgatgattcgcttttagaaccacttcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGTGTATAATAGCCTACCAACG 223 541 1542 Antisense
AATAGCCTACCAACGGATGACGAGA 117 173 1552 Antisense
GGATGACGAGAAGCACACTCATTGA 634 513 1566 Antisense
CACTCATTGATAATCATTGCCCCAG 505 197 1581 Antisense
TTGCCCCAGATTTTAATCACACCGA 311 701 1597 Antisense
CTCAACTTTCAAATTTGCTTTGTTT 683 227 1641 Antisense
TTAACTTCTCAAAATAACTTTCTCG 29 683 1673 Antisense
TAACTTTCTCGGTTTCATCACCCGA 28 639 1687 Antisense
ACGCTTCATCTTCCCGATTGAAATT 570 89 1711 Antisense
CCCTCCCGATGATTCGCTTTTAGAA 124 261 1745 Antisense
GATTCGCTTTTAGAACCACTTCACC 229 431 1755 Antisense
Sequence Source GenBank