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[175714_at]

Description g1399837 /REP_DB=GenBank Identifier /GB=U59212.1 /PROTEIN_GB=AAB09671.1 /CHR=X /FEA=Mapped Transcript /DEF=transmembrane protein
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 30      6grp_total > 05      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1008
1 2 3 4 range
A 1430
(3)
P 		943.9
(-0.4)
P 		592.1
(-2.9)
P 		584.5
(-3)
P 		846
B 1263.1
(3)
P 		825.1
(-0.4)
P 		580.1
(-2.3)
P 		493.8
(-3)
P 		769
C 1502.1
(3)
P 		880.4
(-1)
P 		607.2
(-2.7)
P 		563.5
(-3)
P 		939
avr 1398.4
(3) 		883.1
(-0.6) 		593.1
(-2.7) 		547.3
(-3) 		851

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1045
1 2 3 4 5 6 range
A 1273.3
(3)
P 		1116.4
(2)
P 		633.8
(-1)
P 		530
(-1.6)
P 		570
(-1.4)
P 		312.1
(-3)
P 		961
B 1346.5
(3)
P 		960.2
(0.7)
P 		649.8
(-1.2)
P 		656.7
(-1.2)
P 		511.7
(-2.1)
P 		355.2
(-3)
P 		991
C 1296.9
(3)
P 		1040
(1.5)
P 		694.7
(-0.6)
P 		642.7
(-0.9)
P 		535.6
(-1.6)
P 		301.2
(-3)
P 		996
avr 1305.6
(3) 		1038.9
(1.4) 		659.4
(-0.9) 		609.8
(-1.2) 		539.1
(-1.7) 		322.8
(-3) 		983
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 435
1 2 3 4 range
A 520.7
(3)
P 		204.9
(-1.4)
P 		154.8
(-2)
P 		85.6
(-3)
P 		435
B 402.8
(3)
P 		203.8
(-1)
P 		134.4
(-2.4)
P 		105.2
(-3)
P 		298
C 497.3
(3)
P 		253.1
(-0.6)
P 		211.6
(-1.3)
P 		95
(-3)
P 		402
avr 473.6
(3) 		220.6
(-1) 		166.9
(-1.9) 		95.3
(-3) 		378

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 234.7
(-0)
P 		397
(3)
P 		138
(-1.8)
P 		134.4
(-1.9)
P 		172
(-1.2)
P 		76
(-3)
P 		321
B 468.5
(3)
P 		319.6
(0.3)
P 		157.8
(-2.5)
P 		173.9
(-2.3)
P 		207.9
(-1.7)
P 		132.4
(-3)
P 		336
C 480.7
(3)
P 		317.3
(0.4)
P 		176.8
(-1.8)
P 		129.2
(-2.6)
P 		173.3
(-1.9)
P 		100.8
(-3)
P 		380
avr 394.6
(3) 		344.6
(2) 		157.5
(-1.9) 		145.8
(-2.1) 		184.4
(-1.3) 		103.1
(-3) 		292
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19958
Sequence Type Exemplar sequence
Representative Public ID 1399837 NCBI
Target Description g1399837 /REP_DB=GenBank Identifier /GB=U59212.1 /PROTEIN_GB=AAB09671.1 /CHR=X /FEA=Mapped Transcript /DEF=transmembrane protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171716 NCBI Caenorhabditis elegans INneXin family member (inx-1) (inx-1) mRNA, complete cds. 11/11 A 
C16E9.4a ENSEMBL cdna:known chromosome:CEL140:X:6943690:6956348:-1 gene:C16E9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180968 2 1 NM_171716 175714_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6943689-6956348(-) 100.0 100.0
Public Domain and Genome References
Ensembl C16E9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN71842 Innexin protein 1, isoform a [Caenorhabditis elegans] ref|NP_741826.1| INneXin family member (inx-1) [Caenorhabditis elegans] gb|AAB09671.1| transmembrane protein 0.0
blast CAE65824 Hypothetical protein CBG10939 [Caenorhabditis briggsae] 0.0
blast AAN71843 Innexin protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024407.1| INneXin family member (inx-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741826.1 4 27-49,102-124,188-210,278-300
C16E9.4a 4 27-49,102-124,188-210,278-300
Sequence
Target Sequence 
>C. ELEGANS:175714_AT
ctagtcatttgttgtacagcccctttcctccccaactatttctgaccctcttttctgaca
aatgttggactatttaattgtctttcctacaaaaaaatacctttgtgaactgcacttctc
aatttacaaaacgatacagtgactgtttatagcgggtaataaggcaacgtgcagtaatcc
attctaataagtttaggcactataacttaatcgtatttctgatttttcttttctcatcta
aatttataggaattttcaaaatttcaaaattgttccctttcaaattctcttagggaatta
ttttctatacaattttcatcgggtgtatggtcccctcttcccttcttttcgcccccaacg
acacaatttttttttcaaatttaggaatttttcccttttcctttttctttctattggatt
ttcatttctttccatcggtgactcagataacaattattaccttcataatccatcaattac
aaaagaacctaacaactttccaatgcatttcacctcagaggtagttttccttatttgttt
ggaattttgcatggtgcattttctgcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAGTCATTTGTTGTACAGCCCCTT 218 217 1959 Antisense
CTGACCCTCTTTTCTGACAAATGTT 197 239 2000 Antisense
GGACTATTTAATTGTCTTTCCTACA 681 523 2025 Antisense
AATACCTTTGTGAACTGCACTTCTC 297 173 2054 Antisense
GTGAACTGCACTTCTCAATTTACAA 616 481 2063 Antisense
GGCAACGTGCAGTAATCCATTCTAA 142 535 2121 Antisense
TTTTCATCGGGTGTATGGTCCCCTC 431 673 2271 Antisense
ATTTCTTTCCATCGGTGACTCAGAT 33 15 2382 Antisense
AACAACTTTCCAATGCATTTCACCT 300 135 2449 Antisense
TCACCTCAGAGGTAGTTTTCCTTAT 10 611 2468 Antisense
TTTTGCATGGTGCATTTTCTGCCTT 589 677 2503 Antisense
Sequence Source GenBank