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[175712_s_at]

Description g304325 /REP_DB=GenBank Identifier /GB=L19247.1 /PROTEIN_GB=AAC37166.1 /CHR=3 /FEA=Mapped Transcript /DEF=homeobox protein
Cluster 6grp_total > 18      4grp_total > 13      6grp_cgc > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 73.8
(0.6)
A 		64.1
(-0)
A 		14
(-3)
A 		114.6
(3)
A 		101
B 51.8
(-0.3)
A 		10.3
(-2.8)
A 		7.1
(-3)
A 		108.3
(3)
A 		101
C 30.2
(-0.2)
A 		33.3
(0.7)
A 		41.3
(3)
A 		20.4
(-3)
A 		21
avr 51.9
(0.1) 		35.9
(-1.5) 		20.8
(-3) 		81.1
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 80.2
(3)
A 		6
(-2.8)
A 		8.8
(-2.6)
A 		3.9
(-3)
A 		13
(-2.3)
A 		6.2
(-2.8)
A 		76
B 5.6
(-0.7)
A 		5
(-1.1)
A 		4.9
(-1.1)
A 		1.6
(-3)
A 		4.4
(-1.4)
A 		12.1
(3)
A 		11
C 4.3
(-3)
A 		6.5
(1.7)
A 		7.1
(3)
A 		6.9
(2.6)
A 		5.4
(-0.6)
A 		5.4
(-0.6)
A 		3
avr 30
(3) 		5.8
(-2.6) 		6.9
(-2.4) 		4.1
(-3) 		7.6
(-2.2) 		7.9
(-2.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.9
(3)
A 		13.9
(-0.4)
A 		3.7
(-3)
A 		16.8
(0.4)
A 		23
B 16.5
(1.2)
A 		2.6
(-2.7)
A 		1.6
(-3)
A 		23.1
(3)
A 		22
C 10
(0.6)
A 		9.6
(0.4)
A 		14.4
(3)
A 		3.4
(-3)
A 		11
avr 17.8
(3) 		8.7
(-1.9) 		6.6
(-3) 		14.4
(1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 14.8
(3)
A 		2.1
(-2.5)
A 		1.9
(-2.6)
A 		1
(-3)
A 		3.9
(-1.7)
A 		1.5
(-2.8)
A 		14
B 2
(-0.7)
A 		1.6
(-1.2)
A 		1.2
(-1.8)
A 		0.4
(-3)
A 		1.8
(-1)
A 		4.5
(3)
A 		4
C 1.6
(-1)
A 		2
(3)
A 		1.8
(1)
A 		1.4
(-3)
A 		1.8
(1)
A 		1.8
(1)
A 		1
avr 6.1
(3) 		1.9
(-1.8) 		1.6
(-2.2) 		0.9
(-3) 		2.5
(-1.2) 		2.6
(-1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175712_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19808
Sequence Type Exemplar sequence
Representative Public ID 304325 NCBI
Target Description g304325 /REP_DB=GenBank Identifier /GB=L19247.1 /PROTEIN_GB=AAC37166.1 /CHR=3 /FEA=Mapped Transcript /DEF=homeobox protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025995(11), NM_066296(11), NM_001025996(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025995 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-5) (egl-5) mRNA, complete cds. 11/11 None
NM_066296 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-5) (egl-5) mRNA, complete cds. 11/11 None
NM_001025996 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-5) (egl-5) mRNA, complete cds. 11/11 None
SNAP00000010133 ENSEMBL cdna:SNAP chromosome:CEL140:III:7814394:7816263:1 11/11 None
GENEFINDER00000010135 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7814394:7816259:1 11/11 None
C08C3.1b ENSEMBL cdna:known chromosome:CEL140:III:7814305:7817050:1 gene:C08C3.1 11/11 None
C08C3.1a ENSEMBL cdna:known chromosome:CEL140:III:7814322:7816263:1 gene:C08C3.1 11/11 None
C08C3.1c ENSEMBL cdna:known chromosome:CEL140:III:7814394:7816263:1 gene:C08C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7814302-7816372(+) 100.0 100.0
Public Domain and Genome References
Ensembl C08C3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84878 Egg laying defective protein 5, isoform b [Caenorhabditis elegans] ref|NP_001021166.1| EGg Laying defective family member (egl-5) [Caenorhabditis elegans] sp|P17486|EGL5_CAEEL Homeobox protein egl-5 (Homeobox protein ceh-11) gb|AAC37166.1| homeobox protein 1.0E-113
blast AAP82660 Egg laying defective protein 5, isoform c [Caenorhabditis elegans] ref|NP_001021167.1| EGg Laying defective family member (egl-5) [Caenorhabditis elegans] 1.0E-112
blast AAP82660 Egg laying defective protein 5, isoform c [Caenorhabditis elegans] ref|NP_001021167.1| EGg Laying defective family member (egl-5) [Caenorhabditis elegans] 1.0E-111
blast AAN84878 Egg laying defective protein 5, isoform b [Caenorhabditis elegans] ref|NP_001021166.1| EGg Laying defective family member (egl-5) [Caenorhabditis elegans] sp|P17486|EGL5_CAEEL Homeobox protein egl-5 (Homeobox protein ceh-11) gb|AAC37166.1| homeobox protein 1.0E-111
blast AAA27943 Egg laying defective protein 5, isoform a [Caenorhabditis elegans] ref|NP_498697.3| EGg Laying defective family member (egl-5) [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.00000003404354E-19
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.99999993653105E-19
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 9.99999968265523E-21
Pfam IPR001356 EMBL-EBI Homeobox 6.0E-24
Pfam IPR001356 EMBL-EBI Homeobox 6.0E-24
Pfam IPR001356 EMBL-EBI Homeobox 6.0E-24
Sequence
Target Sequence 
>C. ELEGANS:175712_S_AT
catccacagaagccagtctttacccaggtatctcggctgcgtacatgcagagctacggct
ggccacagaactacaactactttggtcaaccattgggccctgccacgtttcccggatggc
ctcagtgctatccgaatacggcgtggcccaactacggtgagttgttcgcatcatcaaaga
aaggccgtcaaacgtatcaacgctatcaaacatcagttcttgaagcgaaattccaacagt
catcatacgtgtcaaagaaacaacgtgaagagctccgcctgcagactcaattgacagatc
gtcaaatcaaaatctggttccaaaatcgtcgaatgaaggcgaaaaaagagaagcaaagag
tagatgatcacacggaacatactccacttctaccggcaaatccaccaaaaggaatgggaa
tggatatggatgatgagaaaaaatggcaaatggctcattggccaccagcagctgcacaca
atccatatcaatacccgttgtgtccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCACAGAAGCCAGTCTTTACCC 200 211 262 Antisense
GGCTGCGTACATGCAGAGCTACGGC 117 541 296 Antisense
GCTGGCCACAGAACTACAACTACTT 483 293 319 Antisense
TACTTTGGTCAACCATTGGGCCCTG 250 645 339 Antisense
GGCCTCAGTGCTATCCGAATACGGC 25 543 379 Antisense
GGCCGTCAAACGTATCAACGCTATC 533 543 444 Antisense
GAAATTCCAACAGTCATCATACGTG 439 363 488 Antisense
CTCCGCCTGCAGACTCAATTGACAG 223 235 534 Antisense
GATGATCACACGGAACATACTCCAC 375 411 624 Antisense
CAGCTGCACACAATCCATATCAATA 673 201 730 Antisense
CATATCAATACCCGTTGTGTCCACC 653 213 745 Antisense
Sequence Source GenBank