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[175710_s_at] galaptin domain

Description g9857634 /REP_DB=GenBank Identifier /GB=AB038499.1 /PROTEIN_GB=BAB11964.1 /CHR=X /FEA=Mapped Transcript /DEF=galectin LEC-8
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 52      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 26      6grp_total > 52      4grp_total > 59      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4561
1 2 3 4 range
A 2976.1
(0.6)
P 		3421.9
(1.3)
P 		4570.3
(3)
P 		501
(-3)
P 		4069
B 2622
(-0.1)
P 		3768.5
(1.4)
P 		5008.5
(3)
P 		447.6
(-3)
P 		4561
C 2927.7
(0.8)
P 		3851.6
(2.3)
P 		4270.5
(3)
P 		532.5
(-3)
P 		3738
avr 2841.9
(0.4) 		3680.7
(1.6) 		4616.4
(3) 		493.7
(-3) 		4123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7783
1 2 3 4 5 6 range
A 3996.1
(-2.1)
P 		5618.7
(-0.7)
P 		10020.6
(3)
P 		6261.6
(-0.2)
P 		4126.5
(-2)
P 		2934.7
(-3)
P 		7086
B 4037.9
(-2.2)
P 		5912.5
(-0.8)
P 		10717.2
(3)
P 		5933.9
(-0.8)
P 		4444.5
(-1.9)
P 		3075.6
(-3)
P 		7642
C 3633.2
(-2.3)
P 		5596.3
(-0.5)
P 		9235.5
(3)
P 		5949
(-0.1)
P 		4503.1
(-1.5)
P 		2946.5
(-3)
P 		6289
avr 3889.1
(-2.2) 		5709.2
(-0.7) 		9991.1
(3) 		6048.2
(-0.4) 		4358
(-1.8) 		2985.6
(-3) 		7006
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1415
1 2 3 4 range
A 1083.6
(2.4)
P 		742.8
(0.6)
P 		1194.8
(3)
P 		73.3
(-3)
P 		1122
B 836.1
(1.2)
P 		930.7
(1.7)
P 		1160.6
(3)
P 		95.4
(-3)
P 		1065
C 969.1
(0.8)
P 		1107.4
(1.4)
P 		1488.4
(3)
P 		89.8
(-3)
P 		1399
avr 962.9
(1.4) 		927
(1.2) 		1281.3
(3) 		86.2
(-3) 		1195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1888
1 2 3 4 5 6 range
A 736.6
(-2.9)
P 		1998.3
(2.2)
P 		2182.3
(3)
P 		1588.1
(0.6)
P 		1245.2
(-0.8)
P 		714.5
(-3)
P 		1468
B 1405
(-1.9)
P 		1968
(0.4)
P 		2602.4
(3)
P 		1571.7
(-1.2)
P 		1805.7
(-0.3)
P 		1146.9
(-3)
P 		1456
C 1346.7
(-1.4)
P 		1707.6
(0.2)
P 		2350.6
(3)
P 		1196.3
(-2.1)
P 		1457.2
(-0.9)
P 		986.4
(-3)
P 		1364
avr 1162.8
(-2.1) 		1891.3
(1) 		2378.4
(3) 		1452
(-0.9) 		1502.7
(-0.7) 		949.3
(-3) 		1429
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175710_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20002
Sequence Type Exemplar sequence
Representative Public ID 9857634 NCBI
Target Description g9857634 /REP_DB=GenBank Identifier /GB=AB038499.1 /PROTEIN_GB=BAB11964.1 /CHR=X /FEA=Mapped Transcript /DEF=galectin LEC-8
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077248(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077248 NCBI Caenorhabditis elegans gaLECtin family member (lec-8) (lec-8) mRNA, complete cds. 11/11 None
SNAP00000020685 ENSEMBL cdna:SNAP chromosome:CEL140:X:9850538:9851192:1 11/11 None
GENEFINDER00000020707 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9850538:9851192:1 11/11 None
R07B1.10.1 ENSEMBL cdna:known chromosome:CEL140:X:9850140:9851306:1 gene:R07B1.10 11/11 None
R07B1.10.2 ENSEMBL cdna:known chromosome:CEL140:X:9850140:9851267:1 gene:R07B1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9850520-9851268(+) 100.0 100.0
Public Domain and Genome References
Gene Title galaptin domain
Gene Symbol lec-8
Ensembl R07B1.10
Entrez Gene 181198 Entrez gene
SwissProt Q09610 EMBL-EBI
WormBase CE26721 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88548 Hypothetical protein R07B1.10 [Caenorhabditis elegans] ref|NP_509649.1| gaLECtin family member (lec-8) [Caenorhabditis elegans] sp|Q09610|LEC8_CAEEL Probable galaptin lec-8 dbj|BAB11964.1| galectin LEC-8 [Caenorhabditis elegans] 1.0E-108
blast T24001 hypothetical protein R07B1.10 - Caenorhabditis elegans 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 2.1E-66
Sequence
Target Sequence 
>C. ELEGANS:175710_S_AT
gctatccgtgagcaacttcgtgctggatctgaaatccatgtccgtggtcatgttacccac
aagcaccacaaagacttttctgtagagcttctctctggaccccatatcgttcttcacgtc
aacttccgttttgagcatgaccacattgttgcaatgaatacttgcacaaacggagcatgg
ggagccgaaatccgtcaccacaacccgctcaagcaccacgatcactttaacctctccatc
catgttcacgaaggatactatcatatctctgtgaacggagagcacctcgccgacttccca
caccgtttcccagttgaatcagttcaagcaattggactcaaaggagccgcgcatatcgat
gagatctctttctctggatttgaatttggagttgactggaactctcaacatgattttgga
catgctggctacaattcctatggtactgaaacctatgttgctccagttttccaagagact
cactcctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATCCGTGAGCAACTTCGTGCTG 621 303 69 Antisense
GGATCTGAAATCCATGTCCGTGGTC 261 513 93 Antisense
GTCCGTGGTCATGTTACCCACAAGC 120 475 108 Antisense
TTCTGTAGAGCTTCTCTCTGGACCC 19 695 146 Antisense
CCCATATCGTTCTTCACGTCAACTT 608 257 169 Antisense
ACTTCCGTTTTGAGCATGACCACAT 396 103 190 Antisense
AGCATGGGGAGCCGAAATCCGTCAC 576 77 242 Antisense
CCTCTCCATCCATGTTCACGAAGGA 351 267 299 Antisense
TCTGTGAACGGAGAGCACCTCGCCG 406 605 336 Antisense
GACTCAAAGGAGCCGCGCATATCGA 104 373 403 Antisense
GTTTTCCAAGAGACTCACTCCTACA 113 449 534 Antisense
Sequence Source GenBank