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[175709_at]

Description g5731334 /REP_DB=GenBank Identifier /GB=AF172091.1 /PROTEIN_GB=AAD48875.1 /CHR=3 /FEA=Mapped Transcript /DEF=NOB-1B protein
Cluster 6grp_total > 40      4grp_total > 11      6grp_cgc > 40      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 23.8
(-2.6)
A 		30.7
(-2.3)
A 		17
(-3)
A 		131.3
(3)
P 		114
B 45.8
(1.7)
P 		5.6
(-3)
A 		22.2
(-1.1)
A 		56.8
(3)
A 		51
C 30.9
(-1.9)
A 		43.9
(-1.3)
A 		6.5
(-3)
A 		140.1
(3)
P 		134
avr 33.5
(-1.8) 		26.7
(-2.3) 		15.2
(-3) 		109.4
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 60.1
(1)
A 		28
(-1.2)
A 		38.4
(-0.5)
A 		87.6
(3)
A 		34.2
(-0.8)
A 		3.3
(-3)
A 		84
B 31.2
(0.9)
A 		26.4
(0.2)
A 		46.5
(3)
A 		2.7
(-3)
A 		7.3
(-2.4)
A 		20.9
(-0.5)
A 		44
C 23.3
(-1.9)
A 		79.9
(3)
A 		21
(-2.1)
A 		54.9
(0.8)
A 		10.6
(-3)
A 		23.8
(-1.9)
A 		69
avr 38.2
(1.1) 		44.8
(2.3) 		35.3
(0.6) 		48.4
(3) 		17.4
(-2.7) 		16
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 8.7
(-1.3)
A 		6.7
(-2.1)
A 		4.4
(-3)
A 		19.2
(3)
P 		15
B 14.6
(3)
P 		1.4
(-3)
A 		5.1
(-1.3)
A 		12.1
(1.9)
A 		13
C 10.2
(-0.8)
A 		12.6
(-0.1)
A 		2.3
(-3)
A 		23.6
(3)
P 		21
avr 11.2
(0) 		6.9
(-1.8) 		3.9
(-3) 		18.3
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 11.1
(-0.1)
A 		10
(-0.4)
A 		8.4
(-0.9)
A 		22.2
(3)
A 		10.3
(-0.3)
A 		0.8
(-3)
A 		21
B 10.9
(2.8)
A 		8.8
(1.6)
A 		11.3
(3)
A 		0.7
(-3)
A 		3
(-1.7)
A 		7.8
(1)
A 		11
C 8.6
(-1.5)
A 		24.4
(3)
A 		5.4
(-2.4)
A 		11
(-0.8)
A 		3.4
(-3)
A 		8
(-1.7)
A 		21
avr 10.2
(0.2) 		14.4
(3) 		8.4
(-1) 		11.3
(0.9) 		5.6
(-2.9) 		5.5
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19755
Sequence Type Exemplar sequence
Representative Public ID 5731334 NCBI
Target Description g5731334 /REP_DB=GenBank Identifier /GB=AF172091.1 /PROTEIN_GB=AAD48875.1 /CHR=3 /FEA=Mapped Transcript /DEF=NOB-1B protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067174(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067174 NCBI Caenorhabditis elegans kNOB-like posterior (NO Backside) family member (nob-1) (nob-1) mRNA, complete cds. 11/11 None
Y75B8A.2a ENSEMBL cdna:known chromosome:CEL140:III:12078275:12084196:-1 gene:Y75B8A.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176641 2 1 NM_001027770 175771_at (11)
NM_067174 175709_at (11), 191468_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12078270-12084179(-) 73.49 100.0
Public Domain and Genome References
Ensembl Y75B8A.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22093 Hypothetical protein Y75B8A.2a [Caenorhabditis elegans] ref|NP_499575.3| kNOB-like posterior (NO Backside) family member (nob-1) [Caenorhabditis elegans] gb|AAD48875.1| NOB-1B protein [Caenorhabditis elegans] 1.0E-113
blast CAC70124 Hypothetical protein Y75B8A.2b [Caenorhabditis elegans] ref|NP_001022941.1| kNOB-like posterior (NO Backside) family member (nob-1) [Caenorhabditis elegans] gb|AAD48874.1| homeodomain protein NOB-1A [Caenorhabditis elegans] 4.0E-80
blast CAE75107 Hypothetical protein CBG23030 [Caenorhabditis briggsae] 7.0E-30
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 4.00000006744953E-16
Pfam IPR001356 EMBL-EBI Homeobox 4.0E-16
Sequence
Target Sequence 
>C. ELEGANS:175709_AT
ttagcgccagccaaaacgaactcgaaaaaattgaaaaattttttaaaatttccagaaaag
ttttggcaaaatgccaaatatttaaacctgttccgacctctagaatgttttataggaatt
tttttggcagacttccaaaattatgactttcaaaaactgagtaattgtcacttttcaaac
ttgtcaaacttgtcaaaattttcaaaatttttttggaaaagttttgctatcattttggca
ccactggagtagtttttaacaatttcctcactggcgctaatccatcaataaccatacttt
aaaagttaaaaattacttttcagcacgtggtgtcagagtatcccatttcggattgatcta
cgttgatctacaaaaaatgcgggataagaggcgcagagttcacaactgatttcacatggt
taagaacgtgctgacgtcacctttttttaggaagaaattcccgcatttttgtagatcaca
ccgtaatgggacagcctggcaccactttttgtagccacacttttttgaactaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAGCGCCAGCCAAAACGAACTCGA 5 683 926 Antisense
CCTGTTCCGACCTCTAGAATGTTTT 388 265 1012 Antisense
TTGCTATCATTTTGGCACCACTGGA 673 703 1149 Antisense
TTTAACAATTTCCTCACTGGCGCTA 203 673 1180 Antisense
GGCGCTAATCCATCAATAACCATAC 205 543 1198 Antisense
AATTACTTTTCAGCACGTGGTGTCA 556 169 1236 Antisense
CGTGGTGTCAGAGTATCCCATTTCG 160 243 1251 Antisense
GAGGCGCAGAGTTCACAACTGATTT 75 407 1313 Antisense
CGTGCTGACGTCACCTTTTTTTAGG 142 241 1352 Antisense
CCCGCATTTTTGTAGATCACACCGT 421 261 1385 Antisense
TTGTAGCCACACTTTTTTGAACTAA 60 703 1434 Antisense
Sequence Source GenBank