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[175708_s_at]

Description g9857648 /REP_DB=GenBank Identifier /GB=AB038506.1 /PROTEIN_GB=BAB11971.1 /CHR=2 /FEA=Mapped Transcript /DEF=galectin LEC-5
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 28      6grp_total > 64      4grp_total > 59      6grp_cgc > 92      6grp_cgc_sub > 03      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3210
1 2 3 4 range
A 6289.9
(1.3)
P 		6636.7
(2)
P 		7147.1
(3)
P 		4069.1
(-3)
P 		3078
B 6636.5
(1.5)
P 		7278.7
(3)
P 		6449.6
(1)
P 		4781.1
(-3)
P 		2498
C 6172.8
(1.8)
P 		6663.5
(3)
P 		6527.9
(2.7)
P 		4242.7
(-3)
P 		2421
avr 6366.4
(1.8) 		6859.6
(3) 		6708.2
(2.6) 		4364.3
(-3) 		2495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4968
1 2 3 4 5 6 range
A 9310.4
(-1.3)
P 		8592.1
(-2.8)
P 		11317.6
(3)
P 		10498.8
(1.3)
P 		8494.3
(-3)
P 		9188.6
(-1.5)
P 		2823
B 10764.6
(0)
P 		8585.2
(-3)
P 		12904.7
(3)
P 		9906.6
(-1.2)
P 		9171.9
(-2.2)
P 		9580.2
(-1.6)
P 		4320
C 8187.2
(-2.6)
P 		9006.4
(-1.1)
P 		10318.7
(1.2)
P 		11312.6
(3)
P 		7936.7
(-3)
P 		11072
(2.6)
P 		3376
avr 9420.7
(-1.2) 		8727.9
(-2.6) 		11513.7
(3) 		10572.7
(1.1) 		8534.3
(-3) 		9946.9
(-0.2) 		2979
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1695
1 2 3 4 range
A 2290.1
(3)
P 		1440.7
(-0)
P 		1868.4
(1.5)
P 		595.6
(-3)
P 		1695
B 2116.3
(3)
P 		1797.7
(1.3)
P 		1494.5
(-0.4)
P 		1018.8
(-3)
P 		1098
C 2043.4
(2.1)
P 		1915.8
(1.6)
P 		2275.2
(3)
P 		715.4
(-3)
P 		1560
avr 2149.9
(3) 		1718.1
(1.1) 		1879.4
(1.8) 		776.6
(-3) 		1373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2029
1 2 3 4 5 6 range
A 1716.3
(-3)
P 		3055.8
(3)
P 		2464.7
(0.4)
P 		2662.7
(1.2)
P 		2563.2
(0.8)
P 		2237.1
(-0.7)
P 		1340
B 3745.6
(3)
P 		2857.7
(-1.7)
P 		3133.7
(-0.3)
P 		2623.9
(-3)
P 		3726.4
(2.9)
P 		3572.4
(2.1)
P 		1122
C 3034.6
(0.2)
P 		2748.1
(-1)
P 		2626.3
(-1.5)
P 		2275
(-3)
P 		2568.2
(-1.8)
P 		3706.4
(3)
P 		1431
avr 2832.2
(-0.1) 		2887.2
(0.4) 		2741.6
(-1) 		2520.5
(-3) 		2952.6
(1) 		3172
(3) 		652
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175708_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19749
Sequence Type Exemplar sequence
Representative Public ID 9857648 NCBI
Target Description g9857648 /REP_DB=GenBank Identifier /GB=AB038506.1 /PROTEIN_GB=BAB11971.1 /CHR=2 /FEA=Mapped Transcript /DEF=galectin LEC-5
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062762 NCBI Caenorhabditis elegans gaLECtin family member (lec-5) (lec-5) mRNA, complete cds. 11/11 None
SNAP00000041382 ENSEMBL cdna:SNAP chromosome:CEL140:II:5839675:5841067:-1 11/11 None
GENEFINDER00000041400 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5839675:5841067:-1 11/11 None
ZK1248.16 ENSEMBL cdna:known chromosome:CEL140:II:5839616:5841068:-1 gene:ZK1248.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5839600-5841067(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lec-5
Ensembl ZK1248.16
Entrez Gene 173992 Entrez gene
SwissProt Q23426 EMBL-EBI
WormBase CE29634 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71097 Galectin protein 5 [Caenorhabditis elegans] ref|NP_495163.1| gaLECtin family member (lec-5) [Caenorhabditis elegans] dbj|BAB11971.1| galectin LEC-5 [Caenorhabditis elegans] 1.0E-180
blast CAE59206 Hypothetical protein CBG02518 [Caenorhabditis briggsae] 1.0E-174
blast AAD00843 Ov87 [Onchocerca volvulus] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 2.4E-15
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 1.1E-22
Sequence
Target Sequence 
>C. ELEGANS:175708_S_AT
aggtctttgctaaccgtcttgaggttggagtcttcactcaacgacttccacttgatggaa
ttgatcacgtctcaatccgtggagatctatcaaaacttcgtcttttccactatggaggaa
gaatcttccctaacccatatatggcagttgctggtcttaccccaggaaagagactggata
tttctgctcttccaaaaggaaagcgtgtcaatgtcaacttgtaccgtgaaaacaaagagt
atgcacttcaagtttccatcagatacaatgagggagctgttgtcagaaacgcaatgacta
gcaatgtttggggaaaagaagagagagaaggaaaaatgccacttgataagaagcaagtgt
tcgatatcaccatcatcaacgaagagtactctttccagatcttccttaacaatgaaagat
tcaccacattctcccaccgtggatcgccaagcgatatcaagactcttgaaattgatggag
acgttgaaatccagactgtcaccattaatgatgctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTCTTTGCTAACCGTCTTGAGGT 6 57 434 Antisense
TGGAGTCTTCACTCAACGACTTCCA 136 547 459 Antisense
AACTTCGTCTTTTCCACTATGGAGG 370 139 527 Antisense
GAATCTTCCCTAACCCATATATGGC 189 329 554 Antisense
AGTTGCTGGTCTTACCCCAGGAAAG 686 63 579 Antisense
GAGACTGGATATTTCTGCTCTTCCA 586 393 603 Antisense
GCGTGTCAATGTCAACTTGTACCGT 265 289 636 Antisense
GTGTTCGATATCACCATCATCAACG 284 485 790 Antisense
AAGAGTACTCTTTCCAGATCTTCCT 76 153 815 Antisense
ATGAAAGATTCACCACATTCTCCCA 323 45 845 Antisense
GACTGTCACCATTAATGATGCTCCA 546 375 927 Antisense
Sequence Source GenBank