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[175705_s_at]

Description g9857640 /REP_DB=GenBank Identifier /GB=AB038502.1 /PROTEIN_GB=BAB11967.1 /CHR=4 /FEA=Mapped Transcript /DEF=galectin LEC-11
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 34      4grp_high_8_8 > 49      6grp_highest_nonorm > 31      6grp_total > 33      4grp_total > 62      6grp_cgc > 20      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2059
1 2 3 4 range
A 1927.5
(3)
P 		1065.4
(-0.3)
P 		1322.7
(0.7)
P 		350.1
(-3)
P 		1577
B 2298.4
(3)
P 		964.3
(-0.9)
P 		1346.4
(0.2)
P 		258.9
(-3)
P 		2040
C 2006
(3)
P 		837.4
(-1)
P 		1219
(0.3)
P 		239.6
(-3)
P 		1766
avr 2077.3
(3) 		955.7
(-0.8) 		1296
(0.4) 		282.9
(-3) 		1794

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 718
1 2 3 4 5 6 range
A 1365.7
(3)
P 		1326.5
(2.7)
P 		1189.6
(1.5)
P 		1090.2
(0.7)
P 		647.6
(-3)
P 		825
(-1.5)
P 		718
B 1300.6
(3)
P 		1031.4
(0.5)
P 		1185.4
(1.9)
P 		829.2
(-1.4)
P 		661.3
(-3)
P 		677.1
(-2.9)
P 		639
C 1251.5
(2.3)
P 		855.6
(-1.6)
P 		1325.8
(3)
P 		975.1
(-0.4)
P 		707.7
(-3)
P 		766.2
(-2.4)
P 		618
avr 1305.9
(3) 		1071.2
(0.8) 		1233.6
(2.3) 		964.8
(-0.2) 		672.2
(-3) 		756.1
(-2.2) 		634
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 693
1 2 3 4 range
A 701.8
(3)
P 		231.3
(-1.3)
P 		345.8
(-0.3)
P 		51.2
(-3)
P 		651
B 732.9
(3)
P 		238.2
(-1.4)
P 		312
(-0.7)
P 		55.2
(-3)
P 		678
C 664
(3)
P 		240.8
(-1.1)
P 		424.9
(0.7)
P 		40.4
(-3)
P 		624
avr 699.6
(3) 		236.8
(-1.3) 		360.9
(-0.1) 		48.9
(-3) 		651

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 251.8
(-1.8)
P 		471.8
(3)
P 		259.1
(-1.6)
P 		276.5
(-1.2)
P 		195.4
(-3)
P 		200.9
(-2.9)
P 		276
B 452.5
(3)
P 		343.3
(0.2)
P 		287.9
(-1.2)
P 		219.6
(-3)
P 		268.7
(-1.7)
P 		252.5
(-2.2)
P 		233
C 463.9
(3)
P 		261.1
(-1.5)
P 		337.4
(0.2)
P 		196.1
(-3)
P 		229
(-2.3)
P 		256.5
(-1.6)
P 		268
avr 389.4
(3) 		358.7
(1.8) 		294.8
(-0.6) 		230.7
(-3) 		231
(-3) 		236.6
(-2.8) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175705_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19885
Sequence Type Exemplar sequence
Representative Public ID 9857640 NCBI
Target Description g9857640 /REP_DB=GenBank Identifier /GB=AB038502.1 /PROTEIN_GB=BAB11967.1 /CHR=4 /FEA=Mapped Transcript /DEF=galectin LEC-11
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028020(11), NM_001028021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028020 NCBI Caenorhabditis elegans gaLECtin family member (lec-11) (lec-11) mRNA, complete cds. 11/11 None
NM_001028021 NCBI Caenorhabditis elegans gaLECtin family member (lec-11) (lec-11) mRNA, complete cds. 11/11 None
SNAP00000010565 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6588219:6591053:-1 11/11 None
GENEFINDER00000010581 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6588219:6590120:-1 9/11 None
F38A5.3a ENSEMBL cdna:known chromosome:CEL140:IV:6588180:6590194:-1 gene:F38A5.3 11/11 None
F38A5.3b ENSEMBL cdna:known chromosome:CEL140:IV:6588219:6588724:-1 gene:F38A5.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6588185-6590202(-) 100.0 100.0
Public Domain and Genome References
Ensembl F38A5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68382 Galectin protein 11, isoform a [Caenorhabditis elegans] ref|NP_001023191.1| gaLECtin family member (lec-11) [Caenorhabditis elegans] 7.0E-94
blast BAB11967.1 galectin LEC-11 [Caenorhabditis elegans] 9.0E-94
blast AAK68382 Galectin protein 11, isoform a [Caenorhabditis elegans] ref|NP_001023191.1| gaLECtin family member (lec-11) [Caenorhabditis elegans] 2.0E-89
blast BAB11967.1 galectin LEC-11 [Caenorhabditis elegans] 3.0E-89
blast CAE61508 Hypothetical protein CBG05407 [Caenorhabditis briggsae] 6.0E-81
blast T29894 hypothetical protein F38A5.3 - Caenorhabditis elegans 5.0E-80
blast AAK68382 Galectin protein 11, isoform a [Caenorhabditis elegans] ref|NP_001023191.1| gaLECtin family member (lec-11) [Caenorhabditis elegans] 2.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 3.3E-7
Pfam IPR009924 EMBL-EBI Protein of unknown function DUF1459 5.8E-36
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 3.3E-7
Sequence
Target Sequence 
>C. ELEGANS:175705_S_AT
aggattcacagtcgaatttcccaccaaaaatggagttgctcttcatatatcggttcgaat
gggttcatatggtcaaaatgtgattgtatttaatcatttacaaagaggaagatggcatcg
agaagaacatcatcagaatacaatcatgtttggccgaccattttgtatgagaattcataa
tgagcacagaaaatattcgatccacgtggacggacatcacatcggacattatcatcatca
taaatgcccaaaacgaatcgttgcaatgactgttcgaggagatcttcgagttggaaaaat
tcatttcgaaaacttcaaacatcataacggaggaggtactgaaatcggtgtaatgcaaat
gcctgttgctccaactccgatcgttgttgctcaaccaccgcctccaatgattgttcccca
accacagattgttccggttgttcagcaaattatgcaaccaatggttcaacccatatatcc
aagtgttcaaccaatcgtgtatccaactgctactccaatcatctatactcaacctgaagt
tatctacatggacggttatcatcaccaccgtcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATTCACAGTCGAATTTCCCACC 468 57 202 Antisense
CAATCATGTTTGGCCGACCATTTTG 310 181 342 Antisense
GATCCACGTGGACGGACATCACATC 601 415 400 Antisense
GACATCACATCGGACATTATCATCA 610 369 414 Antisense
ATGCAAATGCCTGTTGCTCCAACTC 419 43 554 Antisense
CTCCAACTCCGATCGTTGTTGCTCA 335 235 570 Antisense
TTCCCCAACCACAGATTGTTCCGGT 635 695 615 Antisense
GGTTCAACCCATATATCCAAGTGTT 76 507 664 Antisense
CAACCAATCGTGTATCCAACTGCTA 510 185 689 Antisense
GCTACTCCAATCATCTATACTCAAC 353 303 710 Antisense
GACGGTTATCATCACCACCGTCACC 163 377 752 Antisense
Sequence Source GenBank