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[175704_s_at]

Description g5019816 /REP_DB=GenBank Identifier /GB=AF143147.1 /PROTEIN_GB=AAD37862.1 /CHR=3 /FEA=Mapped Transcript /DEF=R151.8A protein
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 65      6grp_total > 63      4grp_total > 32      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 762
(-3)
P 		955.1
(0.4)
P 		1099.2
(3)
P 		1053.6
(2.2)
P 		337
B 855.8
(-3)
P 		1074
(0.9)
P 		1111.3
(1.6)
P 		1189.4
(3)
P 		334
C 766.9
(-3)
P 		1022.7
(1)
P 		1153.9
(3)
P 		1138.2
(2.8)
P 		387
avr 794.9
(-3) 		1017.3
(1) 		1121.5
(2.9) 		1127.1
(3) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 543
1 2 3 4 5 6 range
A 970.5
(-1.7)
P 		967.9
(-1.8)
P 		1332.7
(3)
P 		1266.7
(2.1)
P 		873.7
(-3)
P 		892.6
(-2.8)
P 		459
B 789.7
(-3)
P 		966.7
(-0.9)
P 		1291.8
(3)
P 		933.6
(-1.3)
P 		859
(-2.2)
P 		1015.4
(-0.3)
P 		502
C 820.3
(-2.7)
P 		965.3
(-0.5)
P 		1197.9
(3)
P 		1200.8
(3)
P 		798.9
(-3)
P 		1135.4
(2)
P 		402
avr 860.2
(-2.8) 		966.6
(-1.3) 		1274.1
(3) 		1133.7
(1) 		843.9
(-3) 		1014.5
(-0.6) 		430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 277.5
(2.6)
P 		207.3
(-0.6)
P 		287.4
(3)
P 		154.2
(-3)
P 		133
B 272.9
(3)
P 		265.2
(0.6)
P 		257.5
(-1.8)
P 		253.5
(-3)
P 		19
C 253.9
(-1.2)
P 		294
(-0.1)
P 		402.2
(3)
P 		191.9
(-3)
P 		210
avr 268.1
(0.5) 		255.5
(-0.1) 		315.7
(3) 		199.9
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 178.9
(-3)
P 		344.2
(3)
P 		290.2
(1)
P 		321.3
(2.2)
P 		263.6
(0.1)
P 		217.3
(-1.6)
P 		165
B 274.8
(-1.7)
P 		321.8
(0.4)
P 		313.7
(0)
P 		247.3
(-3)
P 		349
(1.6)
P 		378.7
(3)
P 		131
C 304.1
(-0.3)
P 		294.5
(-0.7)
P 		304.9
(-0.3)
P 		241.5
(-3)
P 		258.5
(-2.3)
P 		380.1
(3)
P 		139
avr 252.6
(-3) 		320.2
(2.6) 		302.9
(1.1) 		270
(-1.6) 		290.4
(0.1) 		325.4
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175704_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19784
Sequence Type Exemplar sequence
Representative Public ID 5019816 NCBI
Target Description g5019816 /REP_DB=GenBank Identifier /GB=AF143147.1 /PROTEIN_GB=AAD37862.1 /CHR=3 /FEA=Mapped Transcript /DEF=R151.8A protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066192 NCBI Caenorhabditis elegans R151.10 (R151.10) mRNA, complete cds. 11/11 None
SNAP00000008517 ENSEMBL cdna:SNAP chromosome:CEL140:III:7230108:7230855:-1 11/11 None
GENEFINDER00000008527 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7230108:7230855:-1 11/11 None
R151.10.1 ENSEMBL cdna:known chromosome:CEL140:III:7229979:7230855:-1 gene:R151.10 11/11 None
R151.10.2 ENSEMBL cdna:known chromosome:CEL140:III:7230108:7230865:-1 gene:R151.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7229975-7230855(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R151.10
Entrez Gene 176021 Entrez gene
SwissProt Q9Y1A1 EMBL-EBI
WormBase CE27198 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20603_AT haloacid dehalogenase-like hydrolase family protein at
ATH1-121501:254039_AT haloacid dehalogenase-like hydrolase family protein at
CANINE_2:CFAAFFX.17564.1.S1_S_AT similar to haloacid dehalogenase-like hydrolase domain containing 1A cfa
CANINE_2:CFAAFFX.17565.1.S1_AT similar to haloacid dehalogenase-like hydrolase domain containing 1A cfa
DROSOPHILA_2:1633149_AT GS1-like dm
DROSOPHILA_2:1632028_A_AT GS1-like dm
DROSOPHILA_2:1624340_AT GS1-like dm
DROSGENOME1:143908_AT GS1-like dm
CHICKEN:GGA.11419.1.S1_AT haloacid dehalogenase-like hydrolase domain containing 1A gga
HG-U133_PLUS_2:203974_AT haloacid dehalogenase-like hydrolase domain containing 1A hs
HG-U133A:203974_AT haloacid dehalogenase-like hydrolase domain containing 1A hs
HG-FOCUS:203974_AT haloacid dehalogenase-like hydrolase domain containing 1A hs
HG-U133A_2:203974_AT haloacid dehalogenase-like hydrolase domain containing 1A hs
HUGENEFL:M86934_AT haloacid dehalogenase-like hydrolase domain containing 1A hs
U133_X3P:G6912345_3P_AT haloacid dehalogenase-like hydrolase domain containing 1A hs
HG-U95AV2:37709_AT haloacid dehalogenase-like hydrolase domain containing 1A hs
HG-U133_PLUS_2:232974_AT Haloacid dehalogenase-like hydrolase domain containing 1A hs
HG-U133B:232974_AT Haloacid dehalogenase-like hydrolase domain containing 1A hs
U133_X3P:HS2.382660.1.S1_3P_AT Haloacid dehalogenase-like hydrolase domain containing 1A hs
U133_X3P:HS.226469.0.S1_3P_AT Haloacid dehalogenase-like hydrolase domain containing 1A hs
HG-U133_PLUS_2:1563091_AT Haloacid dehalogenase-like hydrolase domain containing 1A hs
HG-U95E:87544_AT Haloacid dehalogenase-like hydrolase domain containing 1A hs
HG-U95E:67485_AT Haloacid dehalogenase-like hydrolase domain containing 1A hs
MOUSE430_2:1420775_AT haloacid dehalogenase-like hydrolase domain mm
MOUSE430A_2:1420775_AT haloacid dehalogenase-like hydrolase domain mm
MOE430A:1420775_AT haloacid dehalogenase-like hydrolase domain mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29860 Hypothetical protein R151.10 [Caenorhabditis elegans] ref|NP_498593.1| R151.10 [Caenorhabditis elegans] gb|AAD37862.1| R151.8A protein [Caenorhabditis elegans] 1.0E-134
blast T16768 hypothetical protein R151.8 - Caenorhabditis elegans 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 9.1E-25
Sequence
Target Sequence 
>C. ELEGANS:175704_S_AT
aaaaggagtcctgcgatgcctggagctgagaaactggttcgtcaccttcttcataccgga
gttccagttgcattgtgtactggatcgtgtagtcgcacatttccaacgaaattggataac
cacaaagattgggtgaacatgatcaagttgcaagttttatcgggagatgatcctgaagtg
aaacacggaaaaccacacccagatccatttttggtgactatgaaacgattcccacaagtt
ccagaatcggcggacaaagttcttgtatttgaagattcgtacaatggtgtcttgtcggca
ctcgatgctggaatgcaatgtgtgatggttccagaacgatcgattttcgaccccgattca
gacccagaattcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGGAGTCCTGCGATGCCTGGAG 487 127 270 Antisense
TGAGAAACTGGTTCGTCACCTTCTT 661 567 296 Antisense
ACCGGAGTTCCAGTTGCATTGTGTA 399 87 324 Antisense
TGTGTACTGGATCGTGTAGTCGCAC 418 555 343 Antisense
GTGTAGTCGCACATTTCCAACGAAA 300 485 356 Antisense
AACCACACCCAGATCCATTTTTGGT 417 147 460 Antisense
GTTCCAGAATCGGCGGACAAAGTTC 589 437 507 Antisense
GTACAATGGTGTCTTGTCGGCACTC 499 459 548 Antisense
GTCGGCACTCGATGCTGGAATGCAA 161 473 563 Antisense
CAGAACGATCGATTTTCGACCCCGA 452 205 601 Antisense
CCCCGATTCAGACCCAGAATTCAAA 133 261 620 Antisense
Sequence Source GenBank